Parental gene: | PGGT1B, ENSPPYG00000015694 |
| Aliases: | None |
| Description: | protein geranylgeranyltransferase type I, beta subunit [Source:HGNC Symbol;Acc:8895] |
| Organism: | Orangutan (Pongo abelii) |
| Coordinates: | 5:116242495..116298519(-) |
>ENSPPYG00000015694
ATGGCGGCCACTGAGGACGAGAGGCTAGCAGGGAGCGGTGAGGGAGAGCGGCTGGATTTCTTGCGGGATCGGCACGTGCG
ATTTTTCCAGCGCTGCCTCCAGGTTTTGCCGGAGCGCTATTCTTCACTCGAGACAAGCAGGTTGACAATTGCATTTTTTG
CACTCTCCGGGCTGGATATGTTGGATTCCTTAGATGTGGTGAACAAAGATGATATAATAGAGTGGATTTACTCCCTGCAG
GTCCTTCCCACAGAAGACAGATCAAATCTAAATCGCTGTGGTTTCCGAGGCTCTTCATACCTGGGTATTCCGTTCAATCC
ATCAAAGGCTCCTGGAACAGCTCATCCTTATGATAGTGGCCACATTGCAATGACCTACACTGGCCTCTCATGCTTAGTTA
TTCTTGGAGACGACTTAAGCCGAGTAAATAAAGAAGCTTGCTTAGCAGGCTTGAGAGCCCTTCAGCTGGAAGATGGGAGT
TTTTGTGCAGTACCTGAAGGCAGTGAAAATGACATGCGATTTGTGTACTGTGCTTCCTGTATTTGCTATATGCTCAACAA
CTGGTCAGGCATGGATATGAAAAAAGCCATGCATCCTATATTAGGAGAACGTATGTCCTATGACAATGGACTGGCACAGG
GAGCTGGACTTGAATCTCATGGAGGATCAACTTTTTGTGGCATTGCCTCACTATGTCTGATGGGTAAACTAGAAGAAGTT
TTTTCAGAAAAAGAATTGAACAGGATAAAGAGGTGGTGTATAATGAGGCAACAAAATGGTTATCATGGAAGACCTAATAA
GCCTGTAGACACCTGGTATTCTTTTTGGGTGGGAGCAACTCTAAAGCTTCTAAAAATTTTCCAATACACTAACTTTGAGA
AAAATAGAAATTACATCTTATCAACTCAAGATCGCCTTGTAGGGGGATTTGCCAAGTGGCCAGACAGTCATCCAGATGCT
TTGCATGCATACTTTGGGATCTGTGGCCTGTCACTAATGGAGGAAAGTGGAATTTGTAAGGTTCATCCTGCTCTGAATGT
AAGCACACGGACTTCTGAACGCCTTCTAGATCTCCATCAAAGCTGGAAAACCAAGGACTCTAAACAATGCTCAGAGAATG
TACATATCTCCACA
ATGGCGGCCACTGAGGACGAGAGGCTAGCAGGGAGCGGTGAGGGAGAGCGGCTGGATTTCTTGCGGGATCGGCACGTGCG
ATTTTTCCAGCGCTGCCTCCAGGTTTTGCCGGAGCGCTATTCTTCACTCGAGACAAGCAGGTTGACAATTGCATTTTTTG
CACTCTCCGGGCTGGATATGTTGGATTCCTTAGATGTGGTGAACAAAGATGATATAATAGAGTGGATTTACTCCCTGCAG
GTCCTTCCCACAGAAGACAGATCAAATCTAAATCGCTGTGGTTTCCGAGGCTCTTCATACCTGGGTATTCCGTTCAATCC
ATCAAAGGCTCCTGGAACAGCTCATCCTTATGATAGTGGCCACATTGCAATGACCTACACTGGCCTCTCATGCTTAGTTA
TTCTTGGAGACGACTTAAGCCGAGTAAATAAAGAAGCTTGCTTAGCAGGCTTGAGAGCCCTTCAGCTGGAAGATGGGAGT
TTTTGTGCAGTACCTGAAGGCAGTGAAAATGACATGCGATTTGTGTACTGTGCTTCCTGTATTTGCTATATGCTCAACAA
CTGGTCAGGCATGGATATGAAAAAAGCCATGCATCCTATATTAGGAGAACGTATGTCCTATGACAATGGACTGGCACAGG
GAGCTGGACTTGAATCTCATGGAGGATCAACTTTTTGTGGCATTGCCTCACTATGTCTGATGGGTAAACTAGAAGAAGTT
TTTTCAGAAAAAGAATTGAACAGGATAAAGAGGTGGTGTATAATGAGGCAACAAAATGGTTATCATGGAAGACCTAATAA
GCCTGTAGACACCTGGTATTCTTTTTGGGTGGGAGCAACTCTAAAGCTTCTAAAAATTTTCCAATACACTAACTTTGAGA
AAAATAGAAATTACATCTTATCAACTCAAGATCGCCTTGTAGGGGGATTTGCCAAGTGGCCAGACAGTCATCCAGATGCT
TTGCATGCATACTTTGGGATCTGTGGCCTGTCACTAATGGAGGAAAGTGGAATTTGTAAGGTTCATCCTGCTCTGAATGT
AAGCACACGGACTTCTGAACGCCTTCTAGATCTCCATCAAAGCTGGAAAACCAAGGACTCTAAACAATGCTCAGAGAATG
TACATATCTCCACA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP007412_brain_prefrontal_cortex | 2 .21 RPM |
| SRP007412_cerebellum | 2 .80 RPM |
| SRP007412_heart | 4 .00 RPM |
| SRP007412_kidney | 5 .44 RPM |
| SRP007412_liver | 3 .98 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Callithrix jacchus | ENSCJAG00000016700 | ortholog_one2one | 1 retrogene | |
| Cavia porcellus | ENSCPOG00000002443 | ortholog_one2one | 1 retrogene | |
| Homo sapiens | ENSG00000164219 | ortholog_one2one | 2 retrogenes | |
| Loxodonta africana | ENSLAFG00000003752 | ortholog_one2one | 1 retrogene | |
| Pan troglodytes | ENSPTRG00000017146 | ortholog_one2one | 2 retrogenes |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_pabe_527 | 88.14 | 62.17 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_pabe_545 | 87.76 | 62.43 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_pabe_640 | 91.06 | 62.17 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSPPYG00000015694 retrocopies