Parental gene:

SMU1, ENSCPOG00000006212

Aliases:None
Description:None
Organism:Guinea Pig (Cavia porcellus)
Coordinates:scaffold_27:13899421..13925993(-)


>ENSCPOG00000006212
ATGTCGATCGAAATCGAGTCTTCGGATGTGATCCGTCTTATTATGCAGTATCTGAAGGAGAACAGTTTACATCGGGCCTT
GGCTACCTTACAGGAGGAAACTACTGTGTCTCTGAATACCGTGGACAGCATTGAGAGTTTTGTGGCTGACATTAATAGTG
GCCATTGGGATACTGTTTTACAGGCCATACAGTCATTGAAACTGCCAGACAAAACCCTTATCGATCTCTATGAACAGGTT
GTTTTGGAGTTGATAGAGCTCCGTGAATTGGGTGCTGCGAGGTCACTTCTGAGACAAACCGACCCCATGATCATGTTAAA
ACAGACGCAGCCAGAGCGCTACATTCATCTGGAGAACCTGCTGGCGAGGTCTTATTTTGATCCTCGTGAGGCGTACCCAG
ATGGAAGTAGCAAAGAGAAAAGAAGAGCAGCAATTGCTCAGGCCTTAGCTGGGGAAGTCAGTGTAGTGCCTCCATCTCGT
CTCATGGCATTGCTGGGACAGGCACTGAAGTGGCAGCAGCACCAGGGCTTGCTTCCTCCTGGTATGACCATAGATTTGTT
TCGAGGCAAAGCTGCTGTAAAAGATGTGGAAGAAGAAAAGTTTCCTACACAGCTGAGCAGGCATATTAAGTTTGGTCAAA
AATCGCATGTGGAATGTGCTCGATTTTCTCCAGATGGTCAGTATCTGGTCACTGGGTCTGTTGATGGATTCATTGAAGTA
TGGAACTTTACAACTGGAAAAATCAGAAAGGATCTTAAGTATCAGGCCCAGGATAACTTCATGATGATGGATGATGCTGT
TCTCTGCATGTGTTTCAGCAGAGATACAGAAATGTTAGCAACTGGTGCCCAAGATGGAAAAATCAAGGTGTGGAAAATTC
AGAGTGGACAATGTTTGAGGAGATTTGAAAGGGCACACAGTAAAGGTGTCACCTGTCTGAGTTTTTCTAAGGACAGCAGT
CAGATTCTCAGTGCCTCCTTTGACCAGACAATTAGAATTCATGGGTTAAAATCCGGGAAAACCCTGAAGGAATTCCGCGG
TCATTCCTCGTTTGTTAATGAAGCAACATTTACACAAGATGGACATTATATTATTAGTGCATCCTCTGATGGCACTGTAA
AGATCTGGAACATGAAGACCACAGAATGTTCAAATACCTTTAAATCTCTGGGCAGCACTGCGGGGACCGACATTACTGTC
AACAGTGTGATTCTGCTTCCGAAAAACCCAGAGCACTTTGTGGTGTGCAACAGATCGAATACAGTGGTCATCATGAATAT
GCAGGGGCAGATCGTCAGAAGCTTTAGCTCTGGTAAAAGAGAAGGTGGTGACTTTGTTTGCTGCGCCCTGTCTCCTCGTG
GTGAATGGATCTACTGTGTGGGAGAGGACTTTGTGCTCTACTGTTTCAGCACTGTCACTGGCAAGCTGGAGAGAACTTTG
ACAGTTCATGAAAAGGACGTGATTGGTATTGCACATCATCCCCATCAGAATCTCATTGCTACCTACAGTGAAGATGGACT
CCTAAAGCTCTGGAAACCCTAA

Library Parental gene expression (RPM)
SRP017611_liver 47 .01 RPM
SRP017611_kidney 66 .37 RPM
SRP017611_brain 33 .53 RPM
SRP040447_lung 53 .47 RPM
SRP040447_skeletal_muscle 35 .14 RPM



Species Parental gene accession Homology type Retrogenes number
Cavia porcellus ENSCPOG00000010747 other_paralog 2 retrogenes
retro_cpor_1531, retro_cpor_548,
Cavia porcellus ENSCPOG00000014790 other_paralog 1 retrogene
retro_cpor_12,
Homo sapiens ENSG00000122692 ortholog_one2one 1 retrogene
retro_hsap_457,
Gorilla gorilla ENSGGOG00000014802 ortholog_one2one 1 retrogene
retro_ggor_440,
Myotis lucifugus ENSMLUG00000016097 ortholog_one2one 1 retrogene
retro_mluc_213,
Monodelphis domestica ENSMODG00000003439 ortholog_one2one 1 retrogene
retro_mdom_965,
Ochotona princeps ENSOPRG00000011389 ortholog_one2one 2 retrogenes
retro_opri_19, retro_opri_741,
Pongo abelii ENSPPYG00000019140 ortholog_one2one 1 retrogene
retro_pabe_274,
Pan troglodytes ENSPTRG00000020853 ortholog_one2one 1 retrogene
retro_ptro_344,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cpor_819 79.87 57.89
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Download FASTA sequences of all ENSCPOG00000006212 retrocopies