Parental gene: | DCUN1D4, ENSCPOG00000008945 |
| Aliases: | None |
| Description: | None |
| Organism: | Guinea Pig (Cavia porcellus) |
| Coordinates: | scaffold_24:22529601..22580080(+) |
>ENSCPOG00000008945
CTCCACAATTTAGCGCTTCATGTTGACTTCCAGCTGAACTCTCATCTCTCAACACTGGCAAATATTCATAAGATCTACCA
CACCCTTAATAAGCTAAATCTAACAGAAGACGTTGGCCAAGACGATCACCAAACAGGAAGCTTACGGTCTTGCAGTTCTT
CGGACTGCTTTAGTAAAGTGATGCCCCCAAGGAAAAAGAGAAGACCTGCCTCTGGAGATGACTTATCCGCCAAGAAGAGT
AGACATGACAGCATGTATCGAAAATATGATTCAACTAGAATTAAGACGGAAGAAGAGGCCTTCTCAAGTAAGCGGTGCTT
AGAGTGGTTCTATGAATATGCAGGTACTGAGGATGTTGTAGGTCCTGAAGGAATGGAGAAATTTTGTGAAGACATTGGTG
TAGAACCTGAAAATGTAGTTATGCTTGTCCTAGCTTGGAAATTGGATGCACAAAACATGGGTTACTTTACTCTCCAAGAA
TGGTTAACAGGAATGACTTCTTTACAATGTGATACAACAGAAAAACTCAGAAATTCTTTGGATTGCTTGAGATCATTATT
AAACGATTCTACAAACTTTAAGCTTATTTATAGATATGCATTTGACTTTGCACGGGAAAAGGACCAGCGCAGCCTAGACA
TAAACACTGCCAAGTGCATGTTGGGACTGTTATTAGGAAAAATCTGGCCCCTTTTTCCAGTTTTTCATCAATTCTTAGAG
CAATCAAAATATAAAGTGATTAACAAAGACCAGTGGTGCAATGTGCTTGAGTTCAGCAGAACCATTCATCTTGACCTCAG
CAACTACGACGAAGACGGAGCATGGCCAGTCTTGTTGGATGAGTTTGTGGAGTGGTACAAAGATAAGCAGATGTCCTAG
CTCCACAATTTAGCGCTTCATGTTGACTTCCAGCTGAACTCTCATCTCTCAACACTGGCAAATATTCATAAGATCTACCA
CACCCTTAATAAGCTAAATCTAACAGAAGACGTTGGCCAAGACGATCACCAAACAGGAAGCTTACGGTCTTGCAGTTCTT
CGGACTGCTTTAGTAAAGTGATGCCCCCAAGGAAAAAGAGAAGACCTGCCTCTGGAGATGACTTATCCGCCAAGAAGAGT
AGACATGACAGCATGTATCGAAAATATGATTCAACTAGAATTAAGACGGAAGAAGAGGCCTTCTCAAGTAAGCGGTGCTT
AGAGTGGTTCTATGAATATGCAGGTACTGAGGATGTTGTAGGTCCTGAAGGAATGGAGAAATTTTGTGAAGACATTGGTG
TAGAACCTGAAAATGTAGTTATGCTTGTCCTAGCTTGGAAATTGGATGCACAAAACATGGGTTACTTTACTCTCCAAGAA
TGGTTAACAGGAATGACTTCTTTACAATGTGATACAACAGAAAAACTCAGAAATTCTTTGGATTGCTTGAGATCATTATT
AAACGATTCTACAAACTTTAAGCTTATTTATAGATATGCATTTGACTTTGCACGGGAAAAGGACCAGCGCAGCCTAGACA
TAAACACTGCCAAGTGCATGTTGGGACTGTTATTAGGAAAAATCTGGCCCCTTTTTCCAGTTTTTCATCAATTCTTAGAG
CAATCAAAATATAAAGTGATTAACAAAGACCAGTGGTGCAATGTGCTTGAGTTCAGCAGAACCATTCATCTTGACCTCAG
CAACTACGACGAAGACGGAGCATGGCCAGTCTTGTTGGATGAGTTTGTGGAGTGGTACAAAGATAAGCAGATGTCCTAG
| Library | Parental gene expression (RPM) |
|---|---|
| SRP017611_liver | 13 .10 RPM |
| SRP017611_kidney | 16 .23 RPM |
| SRP017611_brain | 20 .36 RPM |
| SRP040447_lung | 12 .36 RPM |
| SRP040447_skeletal_muscle | 9 .19 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Callithrix jacchus | ENSCJAG00000018601 | ortholog_one2one | 1 retrogene | |
| Cavia porcellus | ENSCPOG00000022086 | within_species_paralog | 4 retrogenes | |
| Sarcophilus harrisii | ENSSHAG00000017879 | ortholog_one2one | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_cpor_1176 | 68.78 | 63.36 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_cpor_1179 | 75.84 | 99.66 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSCPOG00000008945 retrocopies