Parental gene: | ENSCPOG00000022086 |
| Aliases: | None |
| Description: | None |
| Organism: | Guinea Pig (Cavia porcellus) |
| Coordinates: | scaffold_7:60779969..60798869(+) |
>ENSCPOG00000022086
AACAAGTTGAAATCATCGCAGAAGGATAAAGTTCGACAGTTTATGATCTTCACACAATCTAGTGAAAAAACTGCAGTAAG
TTGTCTTTCTCAAAATGACTGGAAGTTAGATGTTGCAACAGATAATTTTTTCCAAAATCCTGAACTTTATATACGAGAGA
GTGTAAAAGGATCATTGGACAGGAAGAAGTTAGAACAACTATACAATAGATACAAAGATCCTCAAGATGAAAATAAAATT
GGAATAGATGGCATACAGCAGTTCTGTGATGACCTGGCACTTGATCCGGCCAGCATTAGTGTTTTGATCATTGCATGGAA
GTTCAGAGCAGCGACACAATGTGAGTTCTCCAAGCAGGAGTTCATGGACGGCATGGCAGAATTAGGATGTGACAGCATAG
ACAAGCTAAAGGCTCAAATACCCAAGATGGAACAAGAATTGAAAGAACCAGGACGATTTAAGGATTTTTACCAGTTTACT
TTTAATTTTGCAAAGAATCCAGGACAAAAAGGATTAGATCTAGAAATGGCCATTGCTTACTGGAATTTAGTGCTTAATGG
AAGATTTAAATTCTTAGACTTATGGAATAAATTTTTGTTGGAACATCATAAACGATCAATACCAAAAGATACTTGGAATC
TTCTTTTAGACTTCAGTACAATGATTGCAGATGACATGTCTAATTATGATGAAGAAGGAGCATGGCCTGTTCTTATTGAT
GACTTTGTGGAATTTGCACGCCCTCAAATTGCTGGGACAAAAAGTACAGCAGTG
AACAAGTTGAAATCATCGCAGAAGGATAAAGTTCGACAGTTTATGATCTTCACACAATCTAGTGAAAAAACTGCAGTAAG
TTGTCTTTCTCAAAATGACTGGAAGTTAGATGTTGCAACAGATAATTTTTTCCAAAATCCTGAACTTTATATACGAGAGA
GTGTAAAAGGATCATTGGACAGGAAGAAGTTAGAACAACTATACAATAGATACAAAGATCCTCAAGATGAAAATAAAATT
GGAATAGATGGCATACAGCAGTTCTGTGATGACCTGGCACTTGATCCGGCCAGCATTAGTGTTTTGATCATTGCATGGAA
GTTCAGAGCAGCGACACAATGTGAGTTCTCCAAGCAGGAGTTCATGGACGGCATGGCAGAATTAGGATGTGACAGCATAG
ACAAGCTAAAGGCTCAAATACCCAAGATGGAACAAGAATTGAAAGAACCAGGACGATTTAAGGATTTTTACCAGTTTACT
TTTAATTTTGCAAAGAATCCAGGACAAAAAGGATTAGATCTAGAAATGGCCATTGCTTACTGGAATTTAGTGCTTAATGG
AAGATTTAAATTCTTAGACTTATGGAATAAATTTTTGTTGGAACATCATAAACGATCAATACCAAAAGATACTTGGAATC
TTCTTTTAGACTTCAGTACAATGATTGCAGATGACATGTCTAATTATGATGAAGAAGGAGCATGGCCTGTTCTTATTGAT
GACTTTGTGGAATTTGCACGCCCTCAAATTGCTGGGACAAAAAGTACAGCAGTG
| Library | Parental gene expression (RPM) |
|---|---|
| SRP017611_liver | 15 .45 RPM |
| SRP017611_kidney | 9 .42 RPM |
| SRP017611_brain | 10 .01 RPM |
| SRP040447_lung | 12 .56 RPM |
| SRP040447_skeletal_muscle | 8 .73 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Choloepus hoffmanni | ENSCHOG00000013358 | ortholog_one2many | 14 retrogenes | |
| Callithrix jacchus | ENSCJAG00000005148 | ortholog_one2many | 2 retrogenes | |
| Cavia porcellus | ENSCPOG00000008945 | within_species_paralog | 2 retrogenes | |
| Dasypus novemcinctus | ENSDNOG00000019073 | ortholog_one2many | 2 retrogenes | |
| Echinops telfairi | ENSETEG00000000166 | ortholog_one2many | 1 retrogene | |
| Homo sapiens | ENSG00000043093 | ortholog_one2many | 1 retrogene | |
| Gorilla gorilla | ENSGGOG00000010767 | ortholog_one2many | 1 retrogene | |
| Macaca mulatta | ENSMMUG00000010552 | ortholog_one2many | 1 retrogene | |
| Mustela putorius furo | ENSMPUG00000002369 | ortholog_one2many | 1 retrogene | |
| Mus musculus | ENSMUSG00000027708 | ortholog_one2many | 1 retrogene | |
| Nomascus leucogenys | ENSNLEG00000005983 | ortholog_one2many | 1 retrogene | |
| Otolemur garnettii | ENSOGAG00000000658 | ortholog_one2many | 1 retrogene | |
| Pan troglodytes | ENSPTRG00000015661 | ortholog_one2many | 1 retrogene | |
| Tarsius syrichta | ENSTSYG00000012276 | ortholog_one2many | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_cpor_756 | 79.74 | 59.30 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_cpor_758 | 80.68 | 67.83 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_cpor_870 | 58.86 | 60.85 | Please wait, loading | Please wait, loading | Please wait, loading |
| 4. | retro_cpor_1289 | 78.93 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSCPOG00000022086 retrocopies