Parental gene:

DNAJC17, ENSCPOG00000014110

Aliases:None
Description:None
Organism:Guinea Pig (Cavia porcellus)
Coordinates:scaffold_10:26413709..26424620(-)


>ENSCPOG00000014110
CAGGTGAAGAAAGCATACAGGCAGAAGGCCCTCTCCTGCCACCCAGACAAAAATCCAGATAACCCCAAAGCAGCCGAACT
CTTCCACCAGCTTTCTCAGGCCTTGGAAGTGTTGACTGATGCTGCAGCCAGGGCTGCATATGACAAGGTCAGGAAAGCCA
AGAAGCAGGCAGCAGCGAGGACCCAGAAACTTGATGAGAAAAGGAAAAGAGTGAAGCTTGACCTGGAGGCCCGGGAGCGG
CAGGCCCAGGCCCAGGGGAGTGAGGAGGAGGAAGAGAACCGGAGCACCAGGACTCTGGAGCAGGAGATTGCACGCCTACG
AGAAGAGGGTTCCCGGCAGCTACAGGAGCAGCAGAGGCTCATCCAGGAGCAGATACGCCAGGACCGTGAGCAGAGGCTGA
GAGGAAAGGTGGAAAATAATGAAGGCAAAGGAACTCCCAAACTGAAGCTAAAATGGAAGTGCAAAAAGGAAGATGAGTCC
CAAGGTGGCTACTCCAAAGATGTCCTCCTGCGGCTTTTACAGAAGTATGGTGAAGTTCTCAACCTGGTGATTTCCAGTAA
AAAAGCAGGCACTGCCGTGGTGGAGTTTGCGACTGTCAAGGCTGCGGAGCTGGCTTTCCGGAATGAAGTGGGCCTTGTGG
ATAACCCTCTGAAGATTTCCTGGTTGGAGGGACAGCCCCAGGACACAGCAGGCCCCAGCCACCCAGAACTGTCAAAGGGC
TCAGTGCTGTCAGAGAGGGACTACGAGAGCCTTGTCATGATGCGCATGCGCCAGGCAGCCGAGCGCCAACAGCTGATCGC
CCAGATGCAGCAGGAGGACAAGGGGCAGCTCACGTAG

Library Parental gene expression (RPM)
SRP017611_liver 5 .31 RPM
SRP017611_kidney 9 .00 RPM
SRP017611_brain 6 .56 RPM
SRP040447_lung 12 .94 RPM
SRP040447_skeletal_muscle 5 .48 RPM



Species Parental gene accession Homology type Retrogenes number
Callithrix jacchus ENSCJAG00000020803 ortholog_one2many 4 retrogenes
retro_cjac_1013, retro_cjac_4017, retro_cjac_738, retro_cjac_820,
Homo sapiens ENSG00000104129 ortholog_one2one 2 retrogenes
retro_hsap_2363, retro_hsap_3468,
Gorilla gorilla ENSGGOG00000000051 ortholog_one2many 1 retrogene
retro_ggor_2340,
Macropus eugenii ENSMEUG00000005641 ortholog_one2one 2 retrogenes
retro_meug_1387, retro_meug_2001,
Myotis lucifugus ENSMLUG00000014835 ortholog_one2many 1 retrogene
retro_mluc_317,
Macaca mulatta ENSMMUG00000013160 ortholog_one2many 1 retrogene
retro_mmul_1574,
Mus musculus ENSMUSG00000034278 ortholog_one2one 1 retrogene
retro_mmus_3346,
Nomascus leucogenys ENSNLEG00000003257 ortholog_one2one 1 retrogene
retro_nleu_343,
Pongo abelii ENSPPYG00000006360 ortholog_one2one 1 retrogene
retro_pabe_2864,
Pan troglodytes ENSPTRG00000006929 ortholog_one2one 2 retrogenes
retro_ptro_1729, retro_ptro_2351,
Rattus norvegicus ENSRNOG00000012368 ortholog_one2many 2 retrogenes
retro_rnor_18, retro_rnor_2319,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cpor_693 92.31 97.84
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Download FASTA sequences of all ENSCPOG00000014110 retrocopies