Parental gene:

DNAJC17, ENSG00000104129

Aliases:None
Description:DnaJ (Hsp40) homolog, subfamily C, member 17 [Source:HGNC Symbol;Acc:25556]
Organism:Human (Homo sapiens)
Coordinates:15:41060066..41099675(-)


>ENSG00000104129
ATGGCAGTGACCAAGGAGCTCTTACAGATGGACCTGTACGCGCTGCTAGGCATTGAGGAGAAGGCAGCGGACAAAGAGGT
AAAGAAGGCGTATAGGCAGAAGGCCCTCTCCTGCCACCCAGACAAAAATCCAGATAATCCCAGAGCAGCTGAACTCTTCC
ACCAGCTTTCTCAGGCCTTGGAGGTGCTGACCGATGCTGCAGCCAGGGCTGCATATGACAAGGTCAGGAAAGCCAAGAAG
CAAGCAGCAGAGAGGACCCAGAAACTTGATGAGAAAAGGAAGAAAGTGAAGCTTGACCTGGAGGCCCGGGAGCGGCAGGC
CCAGGCCCAGGAGAGTGAGGAGGAAGAGGAGAGCCGGAGCACCAGGACACTAGAGCAAGAGATCGAACGCCTGAGAGAAG
AGGGTTCCCGGCAGCTGGAGGAACAGCAGAGGCTCATCCGGGAGCAGATACGCCAGGAGCGTGACCAGAGGTTGAGAGGA
AAGGCAGAAAATACTGAAGGCCAAGGAACCCCCAAACTAAAGCTAAAATGGAAGTGCAAGAAGGAGGATGAGTCAAAAGG
TGGCTACTCCAAAGACGTCCTCCTACGGCTTTTGCAGAAGTATGGTGAGGTTCTCAACCTGGTGCTTTCCAGTAAGAAGC
CAGGCACTGCTGTGGTGGAGTTTGCAACCGTCAAGGCAGCGGAGCTGGCTGTCCAGAATGAAGTTGGCCTGGTGGATAAC
CCTCTGAAGATTTCCTGGTTGGAGGGACAGCCCCAGGATGCCGTGGGCCGCAGCCACTCAGGACTGTCAAAGGGCTCAGT
GCTGTCAGAGAGGGACTACGAGAGCCTCGTCATGATGCGCATGCGCCAGGCGGCCGAGCGGCAACAGCTGATCGCACGGA
TGCAGCAGGAAGACCAGGAGGGGCCGCCTACGTAG

Library Parental gene expression (RPM)
bodymap2_adipose 7 .22 RPM
bodymap2_adrenal 7 .84 RPM
bodymap2_brain 2 .46 RPM
bodymap2_breast 5 .84 RPM
bodymap2_colon 3 .89 RPM
bodymap2_heart 2 .16 RPM
bodymap2_kidney 5 .09 RPM
bodymap2_liver 6 .34 RPM
bodymap2_lung 5 .63 RPM
bodymap2_lymph_node 4 .88 RPM
bodymap2_ovary 6 .65 RPM
bodymap2_prostate 6 .29 RPM
bodymap2_skeletal_muscle 1 .20 RPM
bodymap2_testis 4 .88 RPM
bodymap2_thyroid 6 .36 RPM
bodymap2_white_blood_cells 5 .53 RPM



Species Parental gene accession Homology type Retrogenes number
Callithrix jacchus ENSCJAG00000020803 ortholog_one2many 4 retrogenes
retro_cjac_1013, retro_cjac_4017, retro_cjac_738, retro_cjac_820,
Cavia porcellus ENSCPOG00000014110 ortholog_one2one 1 retrogene
retro_cpor_693,
Gorilla gorilla ENSGGOG00000000051 ortholog_one2one 1 retrogene
retro_ggor_2340,
Macropus eugenii ENSMEUG00000005641 ortholog_one2one 2 retrogenes
retro_meug_1387, retro_meug_2001,
Myotis lucifugus ENSMLUG00000014835 ortholog_one2many 1 retrogene
retro_mluc_317,
Macaca mulatta ENSMMUG00000013160 ortholog_one2one 1 retrogene
retro_mmul_1574,
Mus musculus ENSMUSG00000034278 ortholog_one2one 1 retrogene
retro_mmus_3346,
Nomascus leucogenys ENSNLEG00000003257 ortholog_one2one 1 retrogene
retro_nleu_343,
Pongo abelii ENSPPYG00000006360 ortholog_one2one 1 retrogene
retro_pabe_2864,
Pan troglodytes ENSPTRG00000006929 ortholog_one2one 2 retrogenes
retro_ptro_1729, retro_ptro_2351,
Rattus norvegicus ENSRNOG00000012368 ortholog_one2many 2 retrogenes
retro_rnor_18, retro_rnor_2319,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_hsap_2363 74.87 60.86
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2. retro_hsap_3468 60.37 53.95
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Download FASTA sequences of all ENSG00000104129 retrocopies