Parental gene: | TSR1, ENSCPOG00000014833 |
| Aliases: | None |
| Description: | None |
| Organism: | Guinea Pig (Cavia porcellus) |
| Coordinates: | scaffold_32:20160919..20170390(+) |
>ENSCPOG00000014833
ATGGCAGCCCACCGGTCTGGCCCGCTTAAGCAACATAATAAAGCTCATAAAGGCGGGCGGCATCGGGGTCGAGGATCCGC
ACAGCGGGACGGCAAGGGCCGTGTAGGACTGAAAGTCCTGTGCAAGAAGGTGAGAAGAGAGCTCAGCAGAGTCGACCAGA
GACATCGAGCCAGCCAGCTGCGAAAGCAGAAAAAAGAGGCGGTTCTGGCAGAGAAGAGACAGCTAGGCAGCAAAGATGGG
GCTCCTCACCAGGTGCTGGTGGTGCCTTTGCATAACAGAATTTCTTTGCTTGAAGCCCTTCACCTGCTTCAGGATAGGAA
CGTGGGAACAGTGCACGTGCAGGAATGGGAGAGAACCCATCGTTTTATGCTGCTGTGCCCCCAATTGAAACATCGATGGT
TTTTTACATCTGCAAAGCCAGGGGATCTGCACACTGTATTAGACATGGCTAAAGTGGCTGATACCATCCTGTTCCTCCTT
GATCCATTAGAAGGCTGGGACAGCACTGGGGATTACTGCCTTTCCTGCCTCTTTGCTCAGGGCCTTCCTACCCATACACT
TGCTGTCCAAGGGGTTTCTTGCCTCCCACCGAAGAAGCAGGTAGATTCCAGAAAGAAGCTAAGTAAAGTAGTGGAGAAGC
GCTTTCCTGATGATAAACTTTTTCTGTTAGACACTCAGCAAGAGGCACAGTTGCTGCTTAGACAGTTGGCTAACCAAAAA
CAAAGACATCTTGCTTTTCGAGATCGTCGGGCCTACTTGTTTGCACATGCTGCTGATTTTGTGCCTGGTGAACAGAATAA
ATTGGTGGGCACCTTGAAAATTTCAGGCTATGTTCGTGGGCAGAATTTGAATGTAAATAGCTTGCTGCATATTGTTGGAC
ATGGTGATTTTCAGATGAAACAGATTGATGCCCCTATGGACCCTTTCCCTTTAAATCCTAGAGTGATTAAATCTCTGAAG
GATCCAGGCATGGTGATGGAGGTTTGTACTACAGATGCTGTAGCTGATATGGAAGACCTTAAGGTTCTAATGAAGGCAGA
CCCTAGCAGACAGGAGTCTTTGCAAACAGAGGTTATCCCAGATCCGATGGATGGGGAGCAAACCTGGCCTACTGAAGAGG
AGCTGAGTGAGGCAAAGGACTTGTTGAAGGAAAGTTCCAAGGTGGTAAAGAAGGTTCCCAAAGGAACGTCCAGTTACCAA
GCTGAATGGATTTTGGATGAGGGTGGTGAAAGTGATGGGGAAGGAGAGGACTATGATGATATAAAACATGAGGATTTTAT
GGAAGAGGACTCTCAGTATGAGAGTAGTGAAGAAGAAGAAGTGGAGGAATGTGAAACTATGACAATAGGGGAGTCTGTGC
ATGATGATTTGTATGATGAAAAAATGGATGAGGAGGCTGAGGAAAAAATGTTGGAGAAATATAAACAAGAAAGAATGGAA
GAGATGTTTCCAGATGAAATAGACACACCTCGTGATGTGCCTGCTAGAATTCGATTTCAGAAATACAGAGGCCTCAAGAG
CTTTCGGACATCTCCATGGGATCCTAAGGAAAACCTTCCTCGAGATTATGCTCGTATCTTTCAGTTTCAGAACTTTGCTA
ATACTAGGAAATGCATCTTTAAAGAGATTGAGGAAAAAGAGGCTGAAGGGGCTGAGGTTGGCTGGTATGTCACACTTCAT
GTCTCTGAAGTCCCTGTCTCAGTGGTTGAGGACTTCAGGCGAGGAGCACCCTTGATTGCATTTTCTTTGCTACTTCATGA
ACAGAAGATGTCAGTATTGAACATGGTGGTGAGCCGGAACCCTGGAAACACTGAACCCGTGAAAGCCAAAGAGGAACTGA
TTTTCCATTGTGGATTCAGACGTTTCCGAGCCTCACCTTTATTCTCTCAGCACACTGCAGCGGATAAACACAAATTTCAG
AGGTTTCTGACTGCTGATGCAGCCTTGGTGGCAACAGTATATGCACCAATTACTTTTCCTCCTGCATCTGTGCTTCTTTT
CAAGCAGAAAAGCAACGGAATGCACAGCCTTGTTGCTACAGGACATCTGTTGTCAGTGGATCCAGACAGAATGGTCATCA
AGAGAGTTGTTCTGAGTGGTCATCCCTTCAAAATTTTTACTAAGATGGCAGTAGTGCGATACATGTTCTTCAATAGAGAG
GATGTATTATGGTTTAAACCGGTGGAACTGAGGACAAAGTGGGGCCGCAGGGGACACATCAAAGAGCCTTTAGGT
ATGGCAGCCCACCGGTCTGGCCCGCTTAAGCAACATAATAAAGCTCATAAAGGCGGGCGGCATCGGGGTCGAGGATCCGC
ACAGCGGGACGGCAAGGGCCGTGTAGGACTGAAAGTCCTGTGCAAGAAGGTGAGAAGAGAGCTCAGCAGAGTCGACCAGA
GACATCGAGCCAGCCAGCTGCGAAAGCAGAAAAAAGAGGCGGTTCTGGCAGAGAAGAGACAGCTAGGCAGCAAAGATGGG
GCTCCTCACCAGGTGCTGGTGGTGCCTTTGCATAACAGAATTTCTTTGCTTGAAGCCCTTCACCTGCTTCAGGATAGGAA
CGTGGGAACAGTGCACGTGCAGGAATGGGAGAGAACCCATCGTTTTATGCTGCTGTGCCCCCAATTGAAACATCGATGGT
TTTTTACATCTGCAAAGCCAGGGGATCTGCACACTGTATTAGACATGGCTAAAGTGGCTGATACCATCCTGTTCCTCCTT
GATCCATTAGAAGGCTGGGACAGCACTGGGGATTACTGCCTTTCCTGCCTCTTTGCTCAGGGCCTTCCTACCCATACACT
TGCTGTCCAAGGGGTTTCTTGCCTCCCACCGAAGAAGCAGGTAGATTCCAGAAAGAAGCTAAGTAAAGTAGTGGAGAAGC
GCTTTCCTGATGATAAACTTTTTCTGTTAGACACTCAGCAAGAGGCACAGTTGCTGCTTAGACAGTTGGCTAACCAAAAA
CAAAGACATCTTGCTTTTCGAGATCGTCGGGCCTACTTGTTTGCACATGCTGCTGATTTTGTGCCTGGTGAACAGAATAA
ATTGGTGGGCACCTTGAAAATTTCAGGCTATGTTCGTGGGCAGAATTTGAATGTAAATAGCTTGCTGCATATTGTTGGAC
ATGGTGATTTTCAGATGAAACAGATTGATGCCCCTATGGACCCTTTCCCTTTAAATCCTAGAGTGATTAAATCTCTGAAG
GATCCAGGCATGGTGATGGAGGTTTGTACTACAGATGCTGTAGCTGATATGGAAGACCTTAAGGTTCTAATGAAGGCAGA
CCCTAGCAGACAGGAGTCTTTGCAAACAGAGGTTATCCCAGATCCGATGGATGGGGAGCAAACCTGGCCTACTGAAGAGG
AGCTGAGTGAGGCAAAGGACTTGTTGAAGGAAAGTTCCAAGGTGGTAAAGAAGGTTCCCAAAGGAACGTCCAGTTACCAA
GCTGAATGGATTTTGGATGAGGGTGGTGAAAGTGATGGGGAAGGAGAGGACTATGATGATATAAAACATGAGGATTTTAT
GGAAGAGGACTCTCAGTATGAGAGTAGTGAAGAAGAAGAAGTGGAGGAATGTGAAACTATGACAATAGGGGAGTCTGTGC
ATGATGATTTGTATGATGAAAAAATGGATGAGGAGGCTGAGGAAAAAATGTTGGAGAAATATAAACAAGAAAGAATGGAA
GAGATGTTTCCAGATGAAATAGACACACCTCGTGATGTGCCTGCTAGAATTCGATTTCAGAAATACAGAGGCCTCAAGAG
CTTTCGGACATCTCCATGGGATCCTAAGGAAAACCTTCCTCGAGATTATGCTCGTATCTTTCAGTTTCAGAACTTTGCTA
ATACTAGGAAATGCATCTTTAAAGAGATTGAGGAAAAAGAGGCTGAAGGGGCTGAGGTTGGCTGGTATGTCACACTTCAT
GTCTCTGAAGTCCCTGTCTCAGTGGTTGAGGACTTCAGGCGAGGAGCACCCTTGATTGCATTTTCTTTGCTACTTCATGA
ACAGAAGATGTCAGTATTGAACATGGTGGTGAGCCGGAACCCTGGAAACACTGAACCCGTGAAAGCCAAAGAGGAACTGA
TTTTCCATTGTGGATTCAGACGTTTCCGAGCCTCACCTTTATTCTCTCAGCACACTGCAGCGGATAAACACAAATTTCAG
AGGTTTCTGACTGCTGATGCAGCCTTGGTGGCAACAGTATATGCACCAATTACTTTTCCTCCTGCATCTGTGCTTCTTTT
CAAGCAGAAAAGCAACGGAATGCACAGCCTTGTTGCTACAGGACATCTGTTGTCAGTGGATCCAGACAGAATGGTCATCA
AGAGAGTTGTTCTGAGTGGTCATCCCTTCAAAATTTTTACTAAGATGGCAGTAGTGCGATACATGTTCTTCAATAGAGAG
GATGTATTATGGTTTAAACCGGTGGAACTGAGGACAAAGTGGGGCCGCAGGGGACACATCAAAGAGCCTTTAGGT
| Library | Parental gene expression (RPM) |
|---|---|
| SRP017611_liver | 16 .63 RPM |
| SRP017611_kidney | 26 .80 RPM |
| SRP017611_brain | 25 .36 RPM |
| SRP040447_lung | 23 .56 RPM |
| SRP040447_skeletal_muscle | 22 .39 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Canis familiaris | ENSCAFG00000019273 | ortholog_one2many | 1 retrogene | |
| Oryctolagus cuniculus | ENSOCUG00000014256 | ortholog_one2one | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_cpor_1258 | 74.34 | 50.34 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_cpor_1307 | 74.01 | 50.34 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSCPOG00000014833 retrocopies