>retro_cpor_1307
AAGGTGAGAAAAGAACTCAGCAGAGTAGAACAGAAGCATTGTGCCAGCCAGCTCTGAAACCATAACAAGGAGGCAGTTCT
GGCAGAGAAGAGACAGCTAGCGGCAACTCATCAGGTGCTGGTGGTGCCTTCGTATAACAGAATTTCTTTGTCTGAAGCCC
CTCACTTGCTTCAGCATAGGAACATGAGAACAGTGCTCCTGCAGAAATGGGAGAACACTCAGTGCTTTATGCTGCTGTGC
ATAATTGAAACATTGGTGTTTTTTTTTTTTTTCACATCTGCAAAGCCAGGGCATCTACATACTGTGTTAGACGTGGCTAA
AGTGGTTGATACCATCTTATTCCTCTTTGACCCACTAGAAGACTGGGACAGCACTTGGGATTATCTCTTTTCTGCCTCTG
CTCAGGGCCTCCCTACCTATACACTAGCTGTTCAAGGGGTTTCTGACCTCCCACCTAAGAGGCTGGTAGATTCCAGAAAG
AAGCTAAGTAAAGTAGTGGAGAAGTATTTTCCTGATGATAAACTCTTCCTGTTAGACATTCAGCAAGAGGCAGGGATGCT
GCTTAGGCAGCTGGCTAACCAAAAGCAAAGACATCTTGCTTTTGGAGATTGGCAAGCCTACTTGTTTGCCTATGCTGCGG
ATTTTGTACCTAATGAAGAGAATAACTTGGTGGGCACCTTGAAAATCTCAGGCTATGTGCACAGGCAGACTTTGAATATA
AATAGCTTGCTGCATATCGCTGGAGATGGTGATTTTAAAAAGAAACAGATTGATACCCCTGTGGACCCTTTCCTTTTAAA
TCCTAGAGTGATTAACTCTCAGAAGGATCCAGGCATGACAAAGGAGGTTTGTGCTACAGATGCTGTAGTTGATATGAAAC
ACCTTAAGGTCATGACAAAGGCAGACTCTGACATTCAAGAGTCTTTGCAAACAGAAGTTATCCCAGAACCAGTGGAAGGG
GAGCAATCCTGGCCCACTGAGGAGGAGCTGAATGAGGCAAATGACTTGTTGAAGGAAAGTTTCAAGGTGGTAAAGAAGGT
TCCCAAAGGAACATCCAGTTACCAAGCTTAGTGGATTTTGGATGAAGGCGGTAAAAGTGGTGGGGAAGGAGGTGAC
ORF - retro_cpor_1307 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
74.01 % |
Parental protein coverage: |
50.34 % |
Number of stop codons detected: |
2 |
Number of frameshifts detected |
0 |
Retrocopy - Parental Gene Alignment:
Parental | KVRRELSRVDQRHRASQLRKQKKEAVLAEKRQLGSKDGAPHQVLVVPLHNRISLLEALHLLQDRNVGTVH |
| KVR.ELSRV.Q.H.ASQL....KEAVLAEKRQL.....A.HQVLVVP..NRISL.EA.HLLQ.RN..TV. |
Retrocopy | KVRKELSRVEQKHCASQL*NHNKEAVLAEKRQLA----ATHQVLVVPSYNRISLSEAPHLLQHRNMRTVL |
|
Parental | VQEWERTHRFMLLC--PQLKHRWFFTSAKPGDLHTVLDMAKVADTILFLLDPLEGWDSTGDYCLSCLFAQ |
| .Q.WE.T..FMLLC....L......TSAKPG.LHTVLD.AKV.DTILFL.DPLE.WDST.DY..S...AQ |
Retrocopy | LQKWENTQCFMLLCIIETLVXXXXXTSAKPGHLHTVLDVAKVVDTILFLFDPLEDWDSTWDYLFSAS-AQ |
|
Parental | GLPTHTLAVQGVSCLPPKKQVDSRKKLSKVVEKRFPDDKLFLLDTQQEAQLLLRQLANQKQRHLAFRDRR |
| GLPT.TLAVQGVS.LPPK..VDSRKKLSKVVEK.FPDDKLFLLD.QQEA..LLRQLANQKQRHLAF.D.. |
Retrocopy | GLPTYTLAVQGVSDLPPKRLVDSRKKLSKVVEKYFPDDKLFLLDIQQEAGMLLRQLANQKQRHLAFGDWQ |
|
Parental | AYLFAHAADFVPGEQNKLVGTLKISGYVRGQNLNVNSLLHIVGHGDFQMKQIDAPMDPFPLNPRVIKSLK |
| AYLFA.AADFVP.E.N.LVGTLKISGYV..Q.LN.NSLLHI.G.GDF..KQID.P.DPF.LNPRVI.S.K |
Retrocopy | AYLFAYAADFVPNEENNLVGTLKISGYVHRQTLNINSLLHIAGDGDFKKKQIDTPVDPFLLNPRVINSQK |
|
Parental | DPGMVMEVCTTDAVADMEDLKVLMKADPSRQESLQTEVIPDPMDGEQTWPTEEELSEAKDLLKESSKVVK |
| DPGM..EVC.TDAV.DM..LKV..KAD...QESLQTEVIP.P..GEQ.WPTEEEL.EA.DLLKES.KVVK |
Retrocopy | DPGMTKEVCATDAVVDMKHLKVMTKADSDIQESLQTEVIPEPVEGEQSWPTEEELNEANDLLKESFKVVK |
|
Parental | KVPKGTSSYQAEWILDEGGESDGEGED |
| KVPKGTSSYQA.WILDEGG.S.GEG.D |
Retrocopy | KVPKGTSSYQA*WILDEGGKSGGEGGD |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
Library |
Retrocopy expression |
Parental gene expression |
SRP017611_brain |
0 .00 RPM |
25 .36 RPM |
SRP017611_kidney |
0 .00 RPM |
26 .80 RPM |
SRP017611_liver |
0 .00 RPM |
16 .63 RPM |
SRP040447_lung |
0 .00 RPM |
23 .56 RPM |
SRP040447_skeletal_muscle |
0 .00 RPM |
22 .39 RPM |
Cavia porcellus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_cpor_1307 retrocopy.
Cavia porcellus was not studied using FANTOM5 data.
retro_cpor_1307 was not experimentally validated.
Retrocopy orthology:
Cavia porcellus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to
help section.
Parental genes homology:
Parental genes homology involve
3 parental genes, and
4 retrocopies.