Parental gene:

EIF3E, ENSECAG00000000236

Aliases:None
Description:eukaryotic translation initiation factor 3, subunit E [Source:HGNC Symbol;Acc:3277]
Organism:Horse (Equus caballus)
Coordinates:9:52702460..52751104(-)


>ENSECAG00000000236
ATGGCGGAGTACGACTTGACTACTCGCATCGCGCACTTTTTGGATCGGCATCTAGTCTTTCCGTTGCTTGAGTTTCTCTC
CGTAAAGGAGATATATAATGAAAAAGAATTATTACAAGGGAAATTGGATCTTCTTAGTGATACCAACATGGTAGACTTTG
CTATGGATGTATACAAAAACCTTTATTCTGATGATATTCCTCATGCTTTGAGAGAAAAAAGAACTACAGTTGTCGCACAA
CTGAAACAACTTCAGGCAGAAACGGAACCAATTGTGAAGATGTTTGAAGATCCAGAAACTACAAGGCAAATGCAGTCAAC
CAGGGATGGTCGGATGCTATTTGACTACCTGGCAGACAAGCATGGTTTTCGGCAGGAATATTTAGATACACTCTACAGGT
ATGCAAAATTCCAGTATGAATGTGGGAATTACTCTGGAGCAGCAGAATATCTTTACTTCTTTAGAGTGTTGGTTCCAGCA
ACGGATAGAAATGCTTTGAGTTCACTCTGGGGAAAACTGGCCTCTGAAATCTTAATGCAGAATTGGGATGCTGCCATGGA
AGACCTTACACGGTTAAAAGAGACCATAGATAATAATTCTGTGAGTTCTCCGCTCCAGTCTCTTCAGCAGCGAACATGGC
TCATTCACTGGTCTCTATTTGTTTTCTTCAACCACCCCAAAGGGCGTGATAACATTATTGATCTCTTCCTTTACCAGCCA
CAGTATCTTAACGCAATTCAGACAATGTGTCCACATATTCTCCGCTATTTGACTACAGCAGTCATAACAAACAAAGATGT
TCGAAAACGCCGGCAGGTACTCAAAGATCTGGTCAAAGTCATTCAACAGGAGTCTTACACATATAAAGACCCAATTACAG
AGTTTGTTGAATGCTTATACGTTAACTTTGACTTTGATGGGGCTCAGAAAAAGCTGAGGGAATGTGAATCAGTGCTTGTG
AATGACTTCTTCTTGGTGGCTTGTCTTGAGGATTTCATTGAAAACGCCCGTCTCTTCATATTTGAGACTTTCTGTCGCAT
CCACCAGTGTATTAGCATTAACATGTTGGCAGACAAACTGAACATGACTCCAGAAGAAGCTGAAAGGTGGATTGTAAATT
TGATTAGAAATGCAAGACTGGATGCCAAGATTGATTCTAAATTAGGTCATGTGGTTATGGGTAACAATGCAGTATCACCC
TATCAGCAAGTGATTGAAAAGACCAAAAGCCTTTCATTTAGAAGCCAGATGTTGGCCATGAATATTGAGAAGAAACTTAA
CCAGAACAGTAGGTCTGAGGCTCCTAACTGGGCAACTCAGGACTCCGGCTTCTAC

Library Parental gene expression (RPM)
SRP021940_synovial_membrane 56 .39 RPM
SRP021940_embryo 120 .04 RPM
SRP021940_cerebellum 17 .50 RPM
SRP021940_testis 27 .62 RPM
SRP021940_placental_villous 49 .94 RPM
SRP021940_articular_cartilage 139 .19 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000006702 ortholog_one2one 1 retrogene
retro_btau_291,
Canis familiaris ENSCAFG00000000702 ortholog_one2one 1 retrogene
retro_cfam_1127,
Callithrix jacchus ENSCJAG00000006458 ortholog_one2one 3 retrogenes
retro_cjac_2333, retro_cjac_2686, retro_cjac_701,
Echinops telfairi ENSETEG00000013105 ortholog_one2one 1 retrogene
retro_etel_2048,
Felis catus ENSFCAG00000003665 ortholog_one2one 1 retrogene
retro_fcat_231,
Homo sapiens ENSG00000104408 ortholog_one2one 1 retrogene
retro_hsap_3489,
Gorilla gorilla ENSGGOG00000022955 ortholog_one2one 2 retrogenes
retro_ggor_2354, retro_ggor_2355,
Myotis lucifugus ENSMLUG00000007269 ortholog_one2one 1 retrogene
retro_mluc_1796,
Macaca mulatta ENSMMUG00000011359 ortholog_one2one 1 retrogene
retro_mmul_2585,
Mustela putorius furo ENSMPUG00000005924 ortholog_one2one 2 retrogenes
retro_mputfur_193, retro_mputfur_736,
Mus musculus ENSMUSG00000022336 ortholog_one2one 2 retrogenes
retro_mmus_1801, retro_mmus_2807,
Nomascus leucogenys ENSNLEG00000004120 ortholog_one2one 1 retrogene
retro_nleu_333,
Oryctolagus cuniculus ENSOCUG00000008050 ortholog_one2one 1 retrogene
retro_ocun_1399,
Pan troglodytes ENSPTRG00000020505 ortholog_one2one 1 retrogene
retro_ptro_2362,
Rattus norvegicus ENSRNOG00000027690 ortholog_one2one 4 retrogenes
retro_rnor_1133, retro_rnor_2879, retro_rnor_583, retro_rnor_584,
Ictidomys tridecemlineatus ENSSTOG00000008976 ortholog_one2one 1 retrogene
retro_itri_545,
Tursiops truncatus ENSTTRG00000011025 ortholog_one2one 2 retrogenes
retro_ttru_1602, retro_ttru_1794,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ecab_860 59.02 58.65
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Download FASTA sequences of all ENSECAG00000000236 retrocopies