Parental gene:

Eif3e, ENSRNOG00000027690

Aliases:Eif3e, Eif3s6
Description:Eukaryotic translation initiation factor 3 subunit E [Source:UniProtKB/Swiss-Prot;Acc:Q641X8]
Organism:Rat (Rattus norvegicus)
Coordinates:13:105112073..105144805(+)


>ENSRNOG00000027690
ATGGCGGAGTACGACTTGACTACTCGCATCGCGCATTTTCTGGATCGACACCTGGTCTTTCCGCTTCTTGAGTTTCTCTC
TGTGAAAGAGATTTATAATGAGAAAGAATTATTACAAGGAAAATTGGATCTTCTTAGTGATACCAATATGGTGGACTTTG
CTATGGATGTTTACAAAAACCTTTATTCCGATGATATTCCCCATGCTCTGAGAGAAAAAAGAACCACAGTTGTTGCACAG
CTGAAACAACTCCAGGCAGAAACAGAGCCAATTGTGAAGATGTTTGAAGATCCAGAAACTACAAGGCAGATGCAGTCAAC
CAGGGATGGCCGGATGTTGTTTGACTACCTGGCAGACAAGCATGGGTTTAGGCAGGAGTACTTAGATACGCTCTACAGAT
ACGCAAAATTCCAATATGAGTGTGGAAATTACTCTGGAGCAGCAGAGTATCTTTACTTCTTTAGAGTTTTGGTTCCAGCA
ACAGATAGAAATGCTTTAAGTTCACTCTGGGGAAAACTGGCCTCTGAAATATTAATGCAGAATTGGGATGCAGCCATGGA
AGACCTTACTCGATTAAAAGAGACCATAGACAATAATTCTGTGAGTTCTCCACTCCAGTCTCTTCAACAGCGAACATGGC
TCATTCACTGGTCTCTGTTTGTTTTTTTCAACCATCCAAAAGGCCGTGATAATATTATTGATCTCTTCCTTTACCAACCA
CAGTACCTTAATGCAATTCAGACAATGTGTCCACATATTCTCCGCTATTTGACCACTGCCGTCATAACCAACAAAGATGT
GCGGAAACGCCGGCAGGTGCTGAAAGACCTAGTGAAAGTTATTCAACAGGAGTCTTACACATATAAAGACCCAATTACAG
AATTTGTTGAATGCCTATATGTTAACTTTGATTTTGATGGAGCTCAGAAAAAGCTAAGAGAATGTGAATCAGTGCTTGTG
AATGACTTCTTCCTGGTAGCATGTCTTGAGGACTTCATTGAGAATGCCCGTCTCTTCATATTTGAGACTTTCTGTCGTAT
CCACCAGTGTATCAGCATTAATATGCTAGCAGATAAACTGAATATGACTCCAGAAGAAGCTGAAAGATGGATTGTGAATT
TGATTAGAAATGCGAGGTTGGATGCCAAGATTGATTCTAAACTAGGTCATGTGGTAATGGGCAACAATGCAGTCTCACCC
TACCAGCAAGTGATTGAAAAGACTAAAAGTCTTTCTTTTAGAAGCCAAATGTTGGCCATGAATATCGAAAAGAAACTTAA
TCAGAACAGTAGATCAGAGGCTCCCAACTGGGCAACCCAAGATTCTGGCTTCTATTAA

Library Parental gene expression (RPM)
SRP017611_brain 25 .52 RPM
SRP017611_kidney 39 .15 RPM
SRP017611_liver 21 .45 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000006702 ortholog_one2one 1 retrogene
retro_btau_291,
Canis familiaris ENSCAFG00000000702 ortholog_one2one 1 retrogene
retro_cfam_1127,
Callithrix jacchus ENSCJAG00000006458 ortholog_one2one 3 retrogenes
retro_cjac_2333, retro_cjac_2686, retro_cjac_701,
Equus caballus ENSECAG00000000236 ortholog_one2one 1 retrogene
retro_ecab_860,
Echinops telfairi ENSETEG00000013105 ortholog_one2one 1 retrogene
retro_etel_2048,
Felis catus ENSFCAG00000003665 ortholog_one2one 1 retrogene
retro_fcat_231,
Homo sapiens ENSG00000104408 ortholog_one2one 1 retrogene
retro_hsap_3489,
Gorilla gorilla ENSGGOG00000022955 ortholog_one2one 2 retrogenes
retro_ggor_2354, retro_ggor_2355,
Myotis lucifugus ENSMLUG00000007269 ortholog_one2one 1 retrogene
retro_mluc_1796,
Macaca mulatta ENSMMUG00000011359 ortholog_one2one 1 retrogene
retro_mmul_2585,
Mustela putorius furo ENSMPUG00000005924 ortholog_one2one 2 retrogenes
retro_mputfur_193, retro_mputfur_736,
Mus musculus ENSMUSG00000022336 ortholog_one2one 2 retrogenes
retro_mmus_1801, retro_mmus_2807,
Nomascus leucogenys ENSNLEG00000004120 ortholog_one2one 1 retrogene
retro_nleu_333,
Oryctolagus cuniculus ENSOCUG00000008050 ortholog_one2one 1 retrogene
retro_ocun_1399,
Pan troglodytes ENSPTRG00000020505 ortholog_one2one 1 retrogene
retro_ptro_2362,
Ictidomys tridecemlineatus ENSSTOG00000008976 ortholog_one2one 1 retrogene
retro_itri_545,
Tursiops truncatus ENSTTRG00000011025 ortholog_one2one 2 retrogenes
retro_ttru_1602, retro_ttru_1794,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_rnor_583 99.10 100.00
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2. retro_rnor_584 99.10 100.00
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3. retro_rnor_1133 84.48 51.91
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4. retro_rnor_2879 84.48 51.91
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Download FASTA sequences of all ENSRNOG00000027690 retrocopies