Parental gene: | SFR1, ENSECAG00000005386 |
| Aliases: | None |
| Description: | SWI5-dependent recombination repair 1 [Source:HGNC Symbol;Acc:29574] |
| Organism: | Horse (Equus caballus) |
| Coordinates: | 1:26235875..26239533(-) |
>ENSECAG00000005386
ATGGCGGAGGGAGAGGTAAACCAGGATTTCATTTTCAAGATGGAAAGCCCATCAGACTCAGCTGTGATTTCACCTGGCAC
CCCGCAGGCGTGTGCCAGGCCACCGTCTCCCCATACCAGTAGTTCAAGAAAACAACCTATGAGCGCAACACTTAGAGAAC
GATTAAGGAAAACCAGATCTTCATTTAATTCCTGTTACAGTGTGGTGAAACGTCTCAAAGTGGAGAATGAAGGAGATGAT
CAGAACTTTTCAGAGAAACCACCAACTTCAGTAGAAGAAAACTCTGTGGAATTTCGAGAAGATGTTAAACGCATAGACAG
TGAATTTGAAGAAAATACCTCTTTGAAAAATACCTTCAAGGATATCAGTGCGTGTGAGTCTGAGTCACTCCATGCTGGGT
CATGCAGTGAGGATCTCCAAAATGACTTTGTGAATGAGGATCTTCCCAGAGAAGGATTAAATGAAGAAAAAGCAAAATTG
GTGAAGCAGATTCAGGAGAAAGAGGACCTTCTTCGGAGGCTCAAACTAGTCAAAATGTACAGATCAAAGAATGACCTGTC
TCAGTTACAGTTGTTAATAAAGAGGTGGAGAAGCTGTAGCCAGCTGTTGCTTTGCGAGTTGCAGTCAGCTTTGTCCGAGG
AGAACAAGAAACTCAGCCTTACTCAGTTGATAGACTACTATGGCTTAGATGATAAATTGCTACACTATAACAGAAATGAA
GAAGAATTTATATAG
ATGGCGGAGGGAGAGGTAAACCAGGATTTCATTTTCAAGATGGAAAGCCCATCAGACTCAGCTGTGATTTCACCTGGCAC
CCCGCAGGCGTGTGCCAGGCCACCGTCTCCCCATACCAGTAGTTCAAGAAAACAACCTATGAGCGCAACACTTAGAGAAC
GATTAAGGAAAACCAGATCTTCATTTAATTCCTGTTACAGTGTGGTGAAACGTCTCAAAGTGGAGAATGAAGGAGATGAT
CAGAACTTTTCAGAGAAACCACCAACTTCAGTAGAAGAAAACTCTGTGGAATTTCGAGAAGATGTTAAACGCATAGACAG
TGAATTTGAAGAAAATACCTCTTTGAAAAATACCTTCAAGGATATCAGTGCGTGTGAGTCTGAGTCACTCCATGCTGGGT
CATGCAGTGAGGATCTCCAAAATGACTTTGTGAATGAGGATCTTCCCAGAGAAGGATTAAATGAAGAAAAAGCAAAATTG
GTGAAGCAGATTCAGGAGAAAGAGGACCTTCTTCGGAGGCTCAAACTAGTCAAAATGTACAGATCAAAGAATGACCTGTC
TCAGTTACAGTTGTTAATAAAGAGGTGGAGAAGCTGTAGCCAGCTGTTGCTTTGCGAGTTGCAGTCAGCTTTGTCCGAGG
AGAACAAGAAACTCAGCCTTACTCAGTTGATAGACTACTATGGCTTAGATGATAAATTGCTACACTATAACAGAAATGAA
GAAGAATTTATATAG
| Library | Parental gene expression (RPM) |
|---|---|
| SRP021940_synovial_membrane | 1 .02 RPM |
| SRP021940_embryo | 2 .05 RPM |
| SRP021940_cerebellum | 0 .21 RPM |
| SRP021940_testis | 1 .47 RPM |
| SRP021940_placental_villous | 1 .92 RPM |
| SRP021940_articular_cartilage | 1 .71 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Echinops telfairi | ENSETEG00000015444 | ortholog_one2one | 1 retrogene | |
| Gorilla gorilla | ENSGGOG00000025713 | ortholog_one2one | 1 retrogene | |
| Macaca mulatta | ENSMMUG00000015327 | ortholog_one2many | 1 retrogene | |
| Pteropus vampyrus | ENSPVAG00000004202 | ortholog_one2one | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_ecab_726 | 77.27 | 97.95 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_ecab_887 | 67.44 | 86.89 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSECAG00000005386 retrocopies