RetrogeneDB ID: | retro_ggor_3039 | ||
Retrocopylocation | Organism: | Gorilla (Gorilla gorilla) | |
Coordinates: | X:83004069..83004795(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | SFR1 | ||
Ensembl ID: | ENSGGOG00000025713 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 80.33 % |
Parental protein coverage: | 85.16 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 2 |
Parental | EKNQDFTFKMEGPSDSAVVLPSTPQASANPSSPYTNSSRKQPMSATLRERLRKTRFSFNSSYNVVKRLKV |
E.NQDF.FKME..SDSAVVLPSTPQA..NPSS..T.SS.KQPMSATL.ERLRKTR.SFNS.YNV.K.LKV | |
Retrocopy | EVNQDFIFKMESQSDSAVVLPSTPQAFVNPSSYRTISS*KQPMSATLKERLRKTRSSFNSCYNVIKLLKV |
Parental | ESEENDQTFSEKPASSTEENCLEFQESFKHID-SEFEENTNLKNTLKNLNVCESQSLDSGSCSALQNEFV |
E.EEN.Q.FSEKPA.STEENCLEFQE.FKHID.SEFEE.T.LKNT.KN.NV.ESQSLDS.SCSALQNEFV | |
Retrocopy | ENEENNQNFSEKPAYSTEENCLEFQENFKHID>SEFEEITYLKNTFKNINVSESQSLDSVSCSALQNEFV |
Parental | NEKLPKQRLNDEKAKLVKQVQEKEDLLRRLKLVKMYRSKN-DLSQLQLLIKKWRSCSQLLLYELQSAVSE |
N..LPKQ.LN.EKAKLVKQVQEKED.L.R..LV.MYRSKN.D.SQLQLLIKK.RSCSQ.LLYEL.SA.SE | |
Retrocopy | N*NLPKQELNEEKAKLVKQVQEKEDFLWRRNLVQMYRSKNVDPSQLQLLIKK*RSCSQPLLYEL*SAMSE |
Parental | ENKKLSL-TQLIDHYGLDDKLLHYNRSEEEFIDV |
ENKK..L.TQLIDHYGLD.KLLH.NRSEEEFI.V | |
Retrocopy | ENKKVNL<TQLIDHYGLDNKLLHCNRSEEEFIGV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 0 .53 RPM |
SRP007412_cerebellum | 0 .00 RPM | 1 .06 RPM |
SRP007412_heart | 0 .00 RPM | 0 .28 RPM |
SRP007412_kidney | 0 .00 RPM | 0 .78 RPM |
SRP007412_liver | 0 .00 RPM | 0 .55 RPM |
SRP007412_testis | 0 .00 RPM | 6 .22 RPM |
Species | RetrogeneDB ID |
---|---|
Macaca mulatta | retro_mmul_2606 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Equus caballus | ENSECAG00000005386 | 2 retrocopies | |
Echinops telfairi | ENSETEG00000015444 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000025713 | 1 retrocopy |
retro_ggor_3039 ,
|
Macaca mulatta | ENSMMUG00000015327 | 1 retrocopy | |
Pteropus vampyrus | ENSPVAG00000004202 | 1 retrocopy |