Parental gene: | ANKRD40, ENSECAG00000012574 |
| Aliases: | None |
| Description: | ankyrin repeat domain 40 [Source:HGNC Symbol;Acc:28233] |
| Organism: | Horse (Equus caballus) |
| Coordinates: | 11:26331317..26335967(-) |
>ENSECAG00000012574
ACCTGCTTACACTGGGCATGTAAACGCAATCATGGTCAGGTGGTCTCTTACTTGTTAAAATCAGGAGCTGACAAAGAGAT
TCTGACCACAAAAGGAGAAATGCCAGTCCAGTTAACATCAAGGAGAGAAATCAGGAAGATTATGGGAGTGGAAGACGACA
ATGATGATGACGACAACCTCCCCCAGCTGAAGAAGGAGTCAGAACTGCCCTTTGTTCCCAACTATTTGGCCAACCCAGCC
TTCCCTTTTATCTACACCCCTGCGGCAGAGGATTCAGCCCAGCTGCAGAACGGGGGCCCCTCCACACCTCCGGCATCACC
CCCTGCAGATGGCTCACCTCCCTTGCTCTCCCCAGGGAACCCTCCGCTGCTGGGGGCCTTTCCCCGGGACCACACCTCTT
TGGCACTCGTTCAGAACGGGGATGTGTCTGCCCCCTCTGCCATACTCAGAGCACCAGAAAGCACAAAACCGGGTCCTGTT
TGTCAGCCACCAGTGAGTCAGAGTCGCTCATTGTTCTCTTCTGTCCCGTCCAAGCCACCAGTGTCTCTGGAGCCTCAGAA
TGGGACGTATGCAGGACCGGCGCCAGCATTCCAGCCATTTTTCTTCACTGGAGCGTTTCCATTTAACATGCAAGAACTGG
TACTCAAGGTAAGGATTCAGAACCCATCTCTTCGAGAAAATGATTTCATTGAAATTGAACTGGACCGACAGGAGCTCACC
TACCAAGAATTGCTCAGAGTGAGTTGCTGTGAGCTGGGTGTTAATCCAGATCAAGTGGAGAAGATCAGAAAGTTACCCAA
TACTCTGGTAAGAAAGGACAAAGATGTTGCTCGACTTCAAGATTTCCAAGAGCTGGAATTGGTTCTAACAATAAGTGAAA
ATAACTTTCTGTTCAGAAATGCTGCATCCACACTGACTGAAAGGCCTTGCTACAACCGGAGAGCTTCAAAACTGACTTAC
TAA
ACCTGCTTACACTGGGCATGTAAACGCAATCATGGTCAGGTGGTCTCTTACTTGTTAAAATCAGGAGCTGACAAAGAGAT
TCTGACCACAAAAGGAGAAATGCCAGTCCAGTTAACATCAAGGAGAGAAATCAGGAAGATTATGGGAGTGGAAGACGACA
ATGATGATGACGACAACCTCCCCCAGCTGAAGAAGGAGTCAGAACTGCCCTTTGTTCCCAACTATTTGGCCAACCCAGCC
TTCCCTTTTATCTACACCCCTGCGGCAGAGGATTCAGCCCAGCTGCAGAACGGGGGCCCCTCCACACCTCCGGCATCACC
CCCTGCAGATGGCTCACCTCCCTTGCTCTCCCCAGGGAACCCTCCGCTGCTGGGGGCCTTTCCCCGGGACCACACCTCTT
TGGCACTCGTTCAGAACGGGGATGTGTCTGCCCCCTCTGCCATACTCAGAGCACCAGAAAGCACAAAACCGGGTCCTGTT
TGTCAGCCACCAGTGAGTCAGAGTCGCTCATTGTTCTCTTCTGTCCCGTCCAAGCCACCAGTGTCTCTGGAGCCTCAGAA
TGGGACGTATGCAGGACCGGCGCCAGCATTCCAGCCATTTTTCTTCACTGGAGCGTTTCCATTTAACATGCAAGAACTGG
TACTCAAGGTAAGGATTCAGAACCCATCTCTTCGAGAAAATGATTTCATTGAAATTGAACTGGACCGACAGGAGCTCACC
TACCAAGAATTGCTCAGAGTGAGTTGCTGTGAGCTGGGTGTTAATCCAGATCAAGTGGAGAAGATCAGAAAGTTACCCAA
TACTCTGGTAAGAAAGGACAAAGATGTTGCTCGACTTCAAGATTTCCAAGAGCTGGAATTGGTTCTAACAATAAGTGAAA
ATAACTTTCTGTTCAGAAATGCTGCATCCACACTGACTGAAAGGCCTTGCTACAACCGGAGAGCTTCAAAACTGACTTAC
TAA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP021940_synovial_membrane | 16 .42 RPM |
| SRP021940_embryo | 22 .66 RPM |
| SRP021940_cerebellum | 44 .71 RPM |
| SRP021940_testis | 22 .51 RPM |
| SRP021940_placental_villous | 14 .34 RPM |
| SRP021940_articular_cartilage | 12 .46 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Rattus norvegicus | ENSRNOG00000002935 | ortholog_one2one | 2 retrogenes | |
| Tursiops truncatus | ENSTTRG00000000221 | ortholog_one2one | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_ecab_937 | 70.81 | 99.69 | Please wait, loading  | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSECAG00000012574 retrocopies