>retro_rnor_755
ATGAGCGCCCTCCTACTGCAGAAGGAACAGCAGGAGAGGCTGCGGGAGGCAGCAGCCTTGGGGGACATTCGGGAGGTGGA
GAAACTGGTGGAGAGCGGGGTGGATGTGAACTCCCAAAATGAGGTCAATGGCTGGACCTGTTTACCCTGGGCATGTAAAC
GCAACCATGGGCAGGTGGTATCCTACCTGTTACAATCAGGGGCTGACAGAGAGATTCTTACAACAAAAGGAGAAATGCCG
GTACAATTAACATCAAAGAGAGAAATCAGGAAGATTATGGGAGTGGAAGAAGCTGATGATGATGACGAGATTCCCCAGCT
GAAGAAGGAGTGAGAACTGCCCTTTGTTCCCAACTACCTGGCCATCCCAGCCTTCCCTTTTATCTACACCCCTGCAGCAG
AAGACTCCACCCAGCTGCAGAATGGGAGCTCCTCCCCACCTCTGGTGTCTCCCCCTGAAGACGGCTCGTCTCCATTGCTT
TCCCCCACAGTGACCCCTCTGCTAGGAGCCTTTCCTAGGGACCACACCTCTTTGGCATTGGTCCAAAATGGTGATATTTC
TGCCCCCTCTGCCATACTTAGAACACCAGAAAGCACAAAACCTGGTCCTGTCTGTCAGCCACCAGTGAGTCAGAACCTGT
TCTCTGTCCCATCCAAGCCACCGGTGTCTCTGGAGCCTCAAAATGGGACATACGCAGGACCAGCGCCAGCATTCCAGCCA
TTTTTCTTCACCGGAGCATTTCCATTTAATATGCAAGAGGTGGTACTCAAGGTGAGGATTCAGAACCCATCTCTTCGTGA
AAATGACTTCATTGACATTGAACTGGATCGACAAGAACTCACCTACCAAGAACTGCTCAGAGTGAGTTGCTGTGAGCTGG
GTGTTAACCCAGACCAAGTGGAAAAGATAAGAAAGTTACCCAATACTCTGTTAAGAAAGGACAAAGATGTTGCACGACTC
CAGGACTTCCAGGAGCTGGAACTGGTTCTCACAATAAGTGAGAATAATTTTCTGTTTAGAAACCCTGCATCCTCACTGAC
TGAGAGCCCTTGCTTCAACCCGAGAGCTTCAAAACTGACATAC
ORF - retro_rnor_755 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
93.66 % |
Parental protein coverage: |
100. % |
Number of stop codons detected: |
1 |
Number of frameshifts detected |
0 |
Retrocopy - Parental Gene Alignment:
Parental | MSALLEQKEQQERLREAAALGDIREVQKLVESGVDVNSQNEVNGWTCLHWACKRNHGQVVSYLLQSGADR |
| MSALL.QKEQQERLREAAALGDIREV.KLVESGVDVNSQNEVNGWTCL.WACKRNHGQVVSYLLQSGADR |
Retrocopy | MSALLLQKEQQERLREAAALGDIREVEKLVESGVDVNSQNEVNGWTCLPWACKRNHGQVVSYLLQSGADR |
|
Parental | EILTTKGEMPVQLTSRREIRKIMGVEEADDDEEIPQLKKESELPFVPNYLANPAFPFIYTPAAEDATQLQ |
| EILTTKGEMPVQLTS.REIRKIMGVEEADDD.EIPQLKKE.ELPFVPNYLA.PAFPFIYTPAAED.TQLQ |
Retrocopy | EILTTKGEMPVQLTSKREIRKIMGVEEADDDDEIPQLKKE*ELPFVPNYLAIPAFPFIYTPAAEDSTQLQ |
|
Parental | NGGPSPPPVSPPAEGSPPLLPPTEPPLLGAFPRDHTSLALVQNGDISAPSAILRTPESTKPGPVCQPPVS |
| NG..SPP.VSPP..GS.PLL.PT..PLLGAFPRDHTSLALVQNGDISAPSAILRTPESTKPGPVCQPPVS |
Retrocopy | NGSSSPPLVSPPEDGSSPLLSPTVTPLLGAFPRDHTSLALVQNGDISAPSAILRTPESTKPGPVCQPPVS |
|
Parental | QNRSLFSVPSKPPVSLEPQNGTYAGPAPAFQPFFFTGAFPFNMQELVLKVRIQNPSLRENDFIEIELDRQ |
| QN..LFSVPSKPPVSLEPQNGTYAGPAPAFQPFFFTGAFPFNMQE.VLKVRIQNPSLRENDFI.IELDRQ |
Retrocopy | QN--LFSVPSKPPVSLEPQNGTYAGPAPAFQPFFFTGAFPFNMQEVVLKVRIQNPSLRENDFIDIELDRQ |
|
Parental | ELTYQELLRVSCCELGVNPDQVEKIRKLPNTLLRKDKDVARLQDFQELELVLTISENNFLFRNPASSLTE |
| ELTYQELLRVSCCELGVNPDQVEKIRKLPNTLLRKDKDVARLQDFQELELVLTISENNFLFRNPASSLTE |
Retrocopy | ELTYQELLRVSCCELGVNPDQVEKIRKLPNTLLRKDKDVARLQDFQELELVLTISENNFLFRNPASSLTE |
|
Parental | RPCFNRRASKLTY |
| .PCFN.RASKLTY |
Retrocopy | SPCFNPRASKLTY |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
Library |
Retrocopy expression |
Parental gene expression |
SRP017611_brain |
0 .00 RPM |
93 .68 RPM |
SRP017611_kidney |
0 .07 RPM |
56 .80 RPM |
SRP017611_liver |
0 .00 RPM |
15 .20 RPM |
Rattus norvegicus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_rnor_755 retrocopy.
Rattus norvegicus was not studied using FANTOM5 data.
retro_rnor_755 was not experimentally validated.
Retrocopy orthology:
Retrocopy retro_rnor_755 has 0 orthologous retrocopies within eutheria group .
Parental genes homology:
Parental genes homology involve
3 parental genes, and
4 retrocopies.