Parental gene:

TRNAU1AP, ENSECAG00000012980

Aliases:None
Description:tRNA selenocysteine 1 associated protein 1 [Source:HGNC Symbol;Acc:30813]
Organism:Horse (Equus caballus)
Coordinates:2:27484308..27502763(-)


>ENSECAG00000012980
ATGGCGGCCAGCCTGTGGATGGGCGACCTGGAGCCCTACATGGATGAGAACTTCATCTCCAGAGCCTTTGCCACCATGGG
GGAGACGGTGATGAGCGTCAAAATTATCCGGAACCGCCTCACTGGGATCCCAGCTGGCTACTGCTTTGTAGAATTCGCAG
ATTTGGCCACAGCTGAGAAGTGTTTGCATAAAATTAATGGGAAACCCCTTCCAGGAGCCACACCTGCAAAACGTTTTAAA
CTGAACTATGCCACTTATGGGAAACAACCAGATAACAGCCCTGAGTACTCCCTCTTTGTGGGGGACCTGACCCCAGATGT
GGACGATGGCATGCTCTATGAATTCTTCGTCAAAGTCTACCCCTCCTGTCGGGGAGGCAAGGTGGTTTTGGACCAGACAG
GCGTGTCTAAGGGCTATGGTTTTGTGAAATTCACAGATGAACTAGAACAGAAGCGAGCCCTGACAGAGTGCCAGGGAGCA
GTAGGACTGGGGTCTAAACCAGTGCGGCTGAGCGTGGCAATCCCTAAAGCGAGTCGTGTGAAGCCAGTGGAATATAGTCA
GATGTACAGTTACAGCTACAACCAGTATTACCAGCAGTACCAGAACTACTATGCCCAGTGGGGCTATGACCAGAACACAG
GCAGCTACAGCTACAGTTATCCCCAGTATGGCTATACCCAGAGCACCATGCAGACGTATGAAGAAGTCGGAGATGATGCA
TTGGAAGACCCCATGCCGCAGCTGGATGTGACTGAGGCCAACAAGGAGTTCATGGAGCAGAGCGAGGAGCTATACGATGC
ACTGATGGACTGTCATTGGCAGCCCCTGGACACAGTGTCTTCAGAGATCCCCGCCATGATGTAG

Library Parental gene expression (RPM)
SRP021940_articular_cartilage 6 .02 RPM
SRP021940_cerebellum 15 .22 RPM
SRP021940_embryo 18 .97 RPM
SRP021940_placental_villous 8 .56 RPM
SRP021940_synovial_membrane 10 .73 RPM
SRP021940_testis 23 .47 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000011367 ortholog_one2one 1 retrogene
retro_amel_1782,
Callithrix jacchus ENSCJAG00000009717 ortholog_one2one 1 retrogene
retro_cjac_3928,
Equus caballus ENSECAG00000008229 within_species_paralog 2 retrogenes
retro_ecab_684, retro_ecab_792,
Mustela putorius furo ENSMPUG00000015511 ortholog_one2one 2 retrogenes
retro_mputfur_1185, retro_mputfur_856,
Pelodiscus sinensis ENSPSIG00000006864 ortholog_one2one 1 retrogene
retro_psin_41,
Tupaia belangeri ENSTBEG00000008049 ortholog_one2one 1 retrogene
retro_tbel_923,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ecab_452 60.13 52.96
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Download FASTA sequences of all ENSECAG00000012980 retrocopies