Parental gene: | TRNAU1AP, ENSECAG00000012980 |
| Aliases: | None |
| Description: | tRNA selenocysteine 1 associated protein 1 [Source:HGNC Symbol;Acc:30813] |
| Organism: | Horse (Equus caballus) |
| Coordinates: | 2:27484308..27502763(-) |
>ENSECAG00000012980
ATGGCGGCCAGCCTGTGGATGGGCGACCTGGAGCCCTACATGGATGAGAACTTCATCTCCAGAGCCTTTGCCACCATGGG
GGAGACGGTGATGAGCGTCAAAATTATCCGGAACCGCCTCACTGGGATCCCAGCTGGCTACTGCTTTGTAGAATTCGCAG
ATTTGGCCACAGCTGAGAAGTGTTTGCATAAAATTAATGGGAAACCCCTTCCAGGAGCCACACCTGCAAAACGTTTTAAA
CTGAACTATGCCACTTATGGGAAACAACCAGATAACAGCCCTGAGTACTCCCTCTTTGTGGGGGACCTGACCCCAGATGT
GGACGATGGCATGCTCTATGAATTCTTCGTCAAAGTCTACCCCTCCTGTCGGGGAGGCAAGGTGGTTTTGGACCAGACAG
GCGTGTCTAAGGGCTATGGTTTTGTGAAATTCACAGATGAACTAGAACAGAAGCGAGCCCTGACAGAGTGCCAGGGAGCA
GTAGGACTGGGGTCTAAACCAGTGCGGCTGAGCGTGGCAATCCCTAAAGCGAGTCGTGTGAAGCCAGTGGAATATAGTCA
GATGTACAGTTACAGCTACAACCAGTATTACCAGCAGTACCAGAACTACTATGCCCAGTGGGGCTATGACCAGAACACAG
GCAGCTACAGCTACAGTTATCCCCAGTATGGCTATACCCAGAGCACCATGCAGACGTATGAAGAAGTCGGAGATGATGCA
TTGGAAGACCCCATGCCGCAGCTGGATGTGACTGAGGCCAACAAGGAGTTCATGGAGCAGAGCGAGGAGCTATACGATGC
ACTGATGGACTGTCATTGGCAGCCCCTGGACACAGTGTCTTCAGAGATCCCCGCCATGATGTAG
ATGGCGGCCAGCCTGTGGATGGGCGACCTGGAGCCCTACATGGATGAGAACTTCATCTCCAGAGCCTTTGCCACCATGGG
GGAGACGGTGATGAGCGTCAAAATTATCCGGAACCGCCTCACTGGGATCCCAGCTGGCTACTGCTTTGTAGAATTCGCAG
ATTTGGCCACAGCTGAGAAGTGTTTGCATAAAATTAATGGGAAACCCCTTCCAGGAGCCACACCTGCAAAACGTTTTAAA
CTGAACTATGCCACTTATGGGAAACAACCAGATAACAGCCCTGAGTACTCCCTCTTTGTGGGGGACCTGACCCCAGATGT
GGACGATGGCATGCTCTATGAATTCTTCGTCAAAGTCTACCCCTCCTGTCGGGGAGGCAAGGTGGTTTTGGACCAGACAG
GCGTGTCTAAGGGCTATGGTTTTGTGAAATTCACAGATGAACTAGAACAGAAGCGAGCCCTGACAGAGTGCCAGGGAGCA
GTAGGACTGGGGTCTAAACCAGTGCGGCTGAGCGTGGCAATCCCTAAAGCGAGTCGTGTGAAGCCAGTGGAATATAGTCA
GATGTACAGTTACAGCTACAACCAGTATTACCAGCAGTACCAGAACTACTATGCCCAGTGGGGCTATGACCAGAACACAG
GCAGCTACAGCTACAGTTATCCCCAGTATGGCTATACCCAGAGCACCATGCAGACGTATGAAGAAGTCGGAGATGATGCA
TTGGAAGACCCCATGCCGCAGCTGGATGTGACTGAGGCCAACAAGGAGTTCATGGAGCAGAGCGAGGAGCTATACGATGC
ACTGATGGACTGTCATTGGCAGCCCCTGGACACAGTGTCTTCAGAGATCCCCGCCATGATGTAG
| Library | Parental gene expression (RPM) |
|---|---|
| SRP021940_synovial_membrane | 10 .73 RPM |
| SRP021940_embryo | 18 .97 RPM |
| SRP021940_cerebellum | 15 .22 RPM |
| SRP021940_testis | 23 .47 RPM |
| SRP021940_placental_villous | 8 .56 RPM |
| SRP021940_articular_cartilage | 6 .02 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Ailuropoda melanoleuca | ENSAMEG00000011367 | ortholog_one2one | 1 retrogene | |
| Callithrix jacchus | ENSCJAG00000009717 | ortholog_one2one | 1 retrogene | |
| Equus caballus | ENSECAG00000008229 | within_species_paralog | 2 retrogenes | |
| Mustela putorius furo | ENSMPUG00000015511 | ortholog_one2one | 2 retrogenes | |
| Pelodiscus sinensis | ENSPSIG00000006864 | ortholog_one2one | 1 retrogene | |
| Tupaia belangeri | ENSTBEG00000008049 | ortholog_one2one | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_ecab_452 | 60.13 | 52.96 | Please wait, loading  | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSECAG00000012980 retrocopies