RetrogeneDB ID: | retro_mputfur_856 | ||
Retrocopylocation | Organism: | Ferret (Mustela putorius furo) | |
Coordinates: | GL896958.1:2352702..2353175(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | TRNAU1AP | ||
Ensembl ID: | ENSMPUG00000015511 | ||
Aliases: | None | ||
Description: | tRNA selenocysteine 1 associated protein 1 [Source:HGNC Symbol;Acc:30813] |
Percent Identity: | 55.28 % |
Parental protein coverage: | 55.05 % |
Number of stop codons detected: | 5 |
Number of frameshifts detected | 3 |
Parental | DDGMLYE-FFVKVYPSCRGGKVVLDQTG-VSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLSVAIP |
D.GM.Y.........SC....VVL.QTG..SKG.GF..F.DEL.QK...T.CQG.VGLGSKPV.LS.A.. | |
Retrocopy | DSGMWYG<LIASIRLSC*RDNVVLNQTG>MSKGFGFMEFMDELVQKQTPTGCQGTVGLGSKPVLLSAAVT |
Parental | KASRVKPVEYSQMYSYSYNQYYQQYQ-NYYAQWGYDQNTGSYSYSYPQYGYTQSTMQTYEEVGDDALEDP |
K.S.VKPV.Y.Q....S.NQ..QQYQ..Y.A.W.YD.NTG..SYSY....Y.QS...T.EEV...A..DP | |
Retrocopy | KGSYVKPVKYNQLSICS*NQCFQQYQ<DYHA*WSYD*NTGNSSYSYSSNDYPQSWTWT*EEVEGNAPSDP |
Parental | MPQLDVVEANKEFMEQSEELY |
.P.L.V.EANKEFMEQ..E.Y | |
Retrocopy | RPELSVAEANKEFMEQRKEQY |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000011367 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000009717 | 1 retrocopy | |
Equus caballus | ENSECAG00000012980 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000015511 | 2 retrocopies |
retro_mputfur_1185, retro_mputfur_856 ,
|
Pelodiscus sinensis | ENSPSIG00000006864 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000008049 | 1 retrocopy |