Parental gene: | RFC5, ENSECAG00000015326 |
| Aliases: | None |
| Description: | replication factor C (activator 1) 5, 36.5kDa [Source:HGNC Symbol;Acc:9973] |
| Organism: | Horse (Equus caballus) |
| Coordinates: | 8:15569923..15834863(-) |
>ENSECAG00000015326
ATGGTTGAAAAGTACCGGCCACAGACACTGAATGATCTCATTTCTCATCAGGACATTTTGAGTACCATTCAAAAATTTAT
CAGTGAAGACCGCCTGCCGCACCTGCTTCTCTATGGTCCTCCGGGGACAGGAAAGACATCCACCATCCTCGCCTGTGCTA
AACAGCTGTACAAAGATAAGGAATTCGGCTCCATGGTCTTGGAGCTGAATGCTTCAGATGACCGAGGAATAGATATCGTT
CGGGGACCAATCCTGAGCTTTGCTAGCACAAGGACAATATTTAAGAAAGGCTTTAAACTAGTGATCTTGGATGAAGCTGA
CGCCATGACTCAGGACGCCCAGAATGCCTTGAGGAGAGTGATTGAGAAATTTACTGAAAATACCAGATTTTGCCTCATCT
GTAACTATCTGTCAAAGATCATCCCAGCCTTGCAGTCCCGATGTACAAGGTTCCGATTTGGTCCCCTCACTCCAGAACTC
ATGGTCCCCCGCCTTCAGCATGTTGTAGAAGAAGAGAAAGTTGCTATAAGTGAAGATGGGATGAAAGCACTTGTAACTCT
CTCCAGTGGAGATATGCGAAGGGCCCTGAACATTTTGCAGAGCACCAATATGGCCTTTGGGAAGGTGACAGAGGAGACTG
TCTACACCTGCACAGGGCACCCGCTCAAGTCAGACATCGCCAACATTCTGGACTGGATGTTGAATCAAGATTTCACCACA
GCCTACAGAAATATTACAGAGTTGAAAACTCTCAAGGGCTTGGCATTACATGATATCCTGACAGAGATACACTTGTTCGT
GCACAGAGTTGACTTTCCAACTTCAGTTCGAATACATTTATTGACCAAAATGGCAGACATCGAGTACAGACTTTCTGTTG
GCACCAACGAGAAGATCCAGCTGAGTTCCCTCATTGCCGCTTTTCAAGTCACCAGAGACCTGATTGTCTCAGAGGCCTAG
ATGGTTGAAAAGTACCGGCCACAGACACTGAATGATCTCATTTCTCATCAGGACATTTTGAGTACCATTCAAAAATTTAT
CAGTGAAGACCGCCTGCCGCACCTGCTTCTCTATGGTCCTCCGGGGACAGGAAAGACATCCACCATCCTCGCCTGTGCTA
AACAGCTGTACAAAGATAAGGAATTCGGCTCCATGGTCTTGGAGCTGAATGCTTCAGATGACCGAGGAATAGATATCGTT
CGGGGACCAATCCTGAGCTTTGCTAGCACAAGGACAATATTTAAGAAAGGCTTTAAACTAGTGATCTTGGATGAAGCTGA
CGCCATGACTCAGGACGCCCAGAATGCCTTGAGGAGAGTGATTGAGAAATTTACTGAAAATACCAGATTTTGCCTCATCT
GTAACTATCTGTCAAAGATCATCCCAGCCTTGCAGTCCCGATGTACAAGGTTCCGATTTGGTCCCCTCACTCCAGAACTC
ATGGTCCCCCGCCTTCAGCATGTTGTAGAAGAAGAGAAAGTTGCTATAAGTGAAGATGGGATGAAAGCACTTGTAACTCT
CTCCAGTGGAGATATGCGAAGGGCCCTGAACATTTTGCAGAGCACCAATATGGCCTTTGGGAAGGTGACAGAGGAGACTG
TCTACACCTGCACAGGGCACCCGCTCAAGTCAGACATCGCCAACATTCTGGACTGGATGTTGAATCAAGATTTCACCACA
GCCTACAGAAATATTACAGAGTTGAAAACTCTCAAGGGCTTGGCATTACATGATATCCTGACAGAGATACACTTGTTCGT
GCACAGAGTTGACTTTCCAACTTCAGTTCGAATACATTTATTGACCAAAATGGCAGACATCGAGTACAGACTTTCTGTTG
GCACCAACGAGAAGATCCAGCTGAGTTCCCTCATTGCCGCTTTTCAAGTCACCAGAGACCTGATTGTCTCAGAGGCCTAG
| Library | Parental gene expression (RPM) |
|---|---|
| SRP021940_synovial_membrane | 7 .36 RPM |
| SRP021940_embryo | 21 .92 RPM |
| SRP021940_cerebellum | 9 .71 RPM |
| SRP021940_testis | 40 .92 RPM |
| SRP021940_placental_villous | 6 .11 RPM |
| SRP021940_articular_cartilage | 6 .85 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Mus musculus | ENSMUSG00000029363 | ortholog_one2one | 1 retrogene | |
| Oryctolagus cuniculus | ENSOCUG00000010377 | ortholog_one2one | 1 retrogene | |
| Rattus norvegicus | ENSRNOG00000001134 | ortholog_one2one | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_ecab_613 | 56.52 | 56.11 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_ecab_946 | 81.93 | 74.61 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSECAG00000015326 retrocopies