Parental gene:

MALSU1, ENSECAG00000016105

Aliases:None
Description:mitochondrial assembly of ribosomal large subunit 1 [Source:HGNC Symbol;Acc:21721]
Organism:Horse (Equus caballus)
Coordinates:4:54877310..54885468(+)


>ENSECAG00000016105
GACCGTGCTCGCGGCCTGCACGGGGTGACCGACCTGGAGGAGCTGCGTGAGCAGACAGCCGGCGAGCCTCGCCTCGAGTC
AGACACAGCAGATCATACTGGTCCCAAGTTTGACATCGATATGCTGGTTTCACTTCTGAGGCAAGAAAATGCAAGAGACA
TTTGTGTGATCAAGGTTCCTCCAGAAATGAAATATACAGATTACTTTGTGATTGGTAGTGGAACTTCCACCCGACACTTA
CATGCCATGGCCTACTACATTGTGAAAATGTACAAATACCTGAAATGTAAAAGTGAGCCTCATGTTAAGATCGAAGGGAA
GGACACTGATGACTGGCTCTGTGTGGACTTTGGTAACATGGTGATTCATTTGATGCTTCCAGAAACCAGAGAAACCTATG
AATTAGAGAAATTATGGACCCTACGTTCTTACGATGACCAGTTAGCTCAGATAGCACCTGAGACATTACCTGAAGACTTC
ATTCTTGGAATAGAAGATGACACTTCATCCCTGACTCCAGTGGAGGTCAAATGTGAATAA

Library Parental gene expression (RPM)
SRP021940_synovial_membrane 2 .28 RPM
SRP021940_embryo 2 .81 RPM
SRP021940_cerebellum 2 .96 RPM
SRP021940_testis 4 .99 RPM
SRP021940_placental_villous 2 .89 RPM
SRP021940_articular_cartilage 1 .77 RPM



Species Parental gene accession Homology type Retrogenes number
Choloepus hoffmanni ENSCHOG00000002338 ortholog_one2one 1 retrogene
retro_chof_1878,
Echinops telfairi ENSETEG00000015566 ortholog_one2one 1 retrogene
retro_etel_574,
Loxodonta africana ENSLAFG00000011921 ortholog_one2one 1 retrogene
retro_lafr_538,
Oryctolagus cuniculus ENSOCUG00000008972 ortholog_one2one 1 retrogene
retro_ocun_621,
Otolemur garnettii ENSOGAG00000017157 ortholog_one2one 1 retrogene
retro_ogar_2324,
Tursiops truncatus ENSTTRG00000008920 ortholog_one2one 1 retrogene
retro_ttru_1715,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ecab_884 92.18 100.00
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Download FASTA sequences of all ENSECAG00000016105 retrocopies