Parental gene:

PPP6C, ENSEEUG00000010197

Aliases:None
Description:protein phosphatase 6, catalytic subunit [Source:HGNC Symbol;Acc:9323]
Organism:Hedgehog (Erinaceus europaeus)
Coordinates:GeneScaffold_2823:16357..36888(-)


>ENSEEUG00000010197
CGGCTGTGTGACTATGTTTGTGATCTCCTCTTGGAAGAGTCAAATGTCCAACCAGTATCAACACCAGTAACAGTGTGTGG
AGACATACATGGACAGTTTTATGACCTTTGTGAACTATTCAGAACTGGAGGCCAGGTTCCTGACACAAACTACATATTTA
TGGGTGACTTTGTAGACAGAGGCTACTATAGTTTGGAGACATTCACTTACCTTCTTGCACTAAAGGCTAAATGGCCTGAT
CGTATTACACTTTTGCGAGGAAATCATGAGAGTAGACAGATAACGCAAGTATATGGATTTTATGATGAGTGCCAAACCAA
ATATGGAAATGCTAATGCCTGGAGATACTGTACCAAAGTTTTCGACATGCTTACTGTAGCAGCTTTAATAGATGAGCAGA
TTTTGTGTGTTCATGGTGGTTTATCTCCTGATATCAAAACACTGGATCAAATTCGAACCATTGAACGGAATCAGGAAATT
CCTCATAAAGGAGCATTTTGTGATCTTGTTTGGTCAGATCCTGAAGATGTGGATACTTGGGCAATCAGTCCCCGGGGAGC
AGGTTGGCTGTTTGGTGCAAAGGTCACAAATGAGTTTGTTCATATCAGCAGCTTAAAACTCAACTGCAGAGCTCACCGTC
TAATGCATGATTGTGGCTATATATTTATATTTGATGGGAAGCTGGTAGCAGTATGGTCTGATCCTAATTGCTGCTATCAT
TATGGAAATATTGTTTCAATTACAGTCTTCAAAGATGTAAATACAAGAGAACTTAAGTTATTCCAGGCAATTCCAGATTC
AGAGCATGTTACTCCTCTGAGAAAAACAACACCATAT

Library Parental gene expression (RPM)
SRP017611_liver 19 .13 RPM
SRP017611_kidney 35 .26 RPM
SRP017611_brain 19 .50 RPM



Species Parental gene accession Homology type Retrogenes number
Choloepus hoffmanni ENSCHOG00000012357 ortholog_one2one 3 retrogenes
retro_chof_1759, retro_chof_183, retro_chof_608,
Dasypus novemcinctus ENSDNOG00000015319 ortholog_one2one 1 retrogene
retro_dnov_1700,
Macaca mulatta ENSMMUG00000020549 ortholog_one2one 1 retrogene
retro_mmul_698,
Rattus norvegicus ENSRNOG00000015145 ortholog_one2one 1 retrogene
retro_rnor_2074,
Sarcophilus harrisii ENSSHAG00000008282 ortholog_one2one 1 retrogene
retro_shar_146,
Sus scrofa ENSSSCG00000005600 ortholog_one2one 1 retrogene
retro_sscr_243,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_eeur_706 57.14 74.91
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Download FASTA sequences of all ENSEEUG00000010197 retrocopies