Parental gene:

AP4S1, ENSG00000100478

Aliases:AP4S1, AP47B, CLA20, CLAPS4, CPSQ6, SPG52
Description:adaptor-related protein complex 4, sigma 1 subunit [Source:HGNC Symbol;Acc:575]
Organism:Human (Homo sapiens)
Coordinates:14:31494311..31562818(+)


>ENSG00000100478
ATGATAAAATTTTTCCTCATGGTGAATAAACAAGGGCAGACTCGACTTTCTAAGTACTATGAACATGTGGATATTAATAA
GCGTACACTTCTGGAAACAGAAGTCATAAAGAGCTGTCTCTCTCGATCCAATGAACAATGCTCTTTCATTGAATATAAGG
ATTTTAAGCTGATATATCGGCAGTATGCAGCTCTCTTCATTGTGGTTGGAGTTAATGACACTGAGAACGAGATGGCTATT
TATGAATTCATTCATAACTTTGTGGAAGTTTTAGATGAGTATTTCAGCCGAGTGAGTGAATTAGATGTATCCTTTTTCAA
TACTGTTTTCCACAGTACTTGGCAAATGCACTCTGGTCCTTATCAGGAACCAATTGATGAACTTCCCAAAATATGCTCAG
CCCTGGAGCCCCAGCAGACTTGCTTTTCTCCAGACAGTTCATCATTCAAAGGAGCTGCCTCCACCACCCCCATCTACTGA

Library Parental gene expression (RPM)
bodymap2_liver 1 .60 RPM
bodymap2_lung 3 .29 RPM
bodymap2_breast 4 .86 RPM
bodymap2_adipose 2 .76 RPM
bodymap2_adrenal 7 .04 RPM
bodymap2_skeletal_muscle 2 .47 RPM
bodymap2_thyroid 11 .90 RPM
bodymap2_prostate 9 .06 RPM
bodymap2_colon 8 .86 RPM
bodymap2_testis 13 .40 RPM
bodymap2_brain 13 .85 RPM
bodymap2_heart 6 .48 RPM
bodymap2_white_blood_cells 5 .16 RPM
bodymap2_lymph_node 7 .11 RPM
bodymap2_ovary 12 .82 RPM
bodymap2_kidney 4 .63 RPM



Species Parental gene accession Homology type Retrogenes number
Choloepus hoffmanni ENSCHOG00000013301 ortholog_one2one 4 retrogenes
retro_chof_2345, retro_chof_2677, retro_chof_393, retro_chof_820,
Dipodomys ordii ENSDORG00000009468 ortholog_one2one 1 retrogene
retro_dord_595,
Erinaceus europaeus ENSEEUG00000013009 ortholog_one2one 1 retrogene
retro_eeur_301,
Homo sapiens ENSG00000106367 within_species_paralog 1 retrogene
retro_hsap_3765,
Homo sapiens ENSG00000182287 within_species_paralog 1 retrogene
retro_hsap_1849,
Gorilla gorilla ENSGGOG00000003198 ortholog_one2one 1 retrogene
retro_ggor_2363,
Monodelphis domestica ENSMODG00000017579 ortholog_one2one 1 retrogene
retro_mdom_1774,
Nomascus leucogenys ENSNLEG00000015901 ortholog_one2one 1 retrogene
retro_nleu_788,
Ornithorhynchus anatinus ENSOANG00000014031 ortholog_one2one 1 retrogene
retro_oana_60,
Pongo abelii ENSPPYG00000005723 ortholog_one2one 1 retrogene
retro_pabe_2889,
Pan troglodytes ENSPTRG00000006239 ortholog_one2one 1 retrogene
retro_ptro_2368,
Pteropus vampyrus ENSPVAG00000017161 ortholog_one2one 1 retrogene
retro_pvam_1455,
Ictidomys tridecemlineatus ENSSTOG00000010759 ortholog_one2one 1 retrogene
retro_itri_1050,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_hsap_3496 93.15 100.00
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Download FASTA sequences of all ENSG00000100478 retrocopies