Parental gene:

HMGCS1, ENSG00000112972

Aliases:HMGCS1, HMGCS
Description:3-hydroxy-3-methylglutaryl-CoA synthase 1 (soluble) [Source:HGNC Symbol;Acc:5007]
Organism:Human (Homo sapiens)
Coordinates:5:43289496..43313614(-)


>ENSG00000112972
ATGCCTGGATCACTTCCTTTGAATGCAGAAGCTTGCTGGCCAAAAGATGTGGGAATTGTTGCCCTTGAGATCTATTTTCC
TTCTCAATATGTTGATCAAGCAGAGTTGGAAAAATATGATGGTGTAGATGCTGGAAAGTATACCATTGGCTTGGGCCAGG
CCAAGATGGGCTTCTGCACAGATAGAGAAGATATTAACTCTCTTTGCATGACTGTGGTTCAGAATCTTATGGAGAGAAAT
AACCTTTCCTATGATTGCATTGGGCGGCTGGAAGTTGGAACAGAGACAATCATCGACAAATCAAAGTCTGTGAAGACTAA
TTTGATGCAGCTGTTTGAAGAGTCTGGGAATACAGATATAGAAGGAATCGACACAACTAATGCATGCTATGGAGGCACAG
CTGCTGTCTTCAATGCTGTTAACTGGATTGAGTCCAGCTCTTGGGATGGACGGTATGCCCTGGTAGTTGCAGGAGATATT
GCTGTATATGCCACAGGAAATGCTAGACCTACAGGTGGAGTTGGAGCAGTAGCTCTGCTAATTGGGCCAAATGCTCCTTT
AATTTTTGAACGAGGGCTTCGTGGGACACATATGCAACATGCCTATGATTTTTACAAGCCTGATATGCTATCTGAATATC
CTATAGTAGATGGAAAACTCTCCATACAGTGCTACCTCAGTGCATTAGACCGCTGCTATTCTGTCTACTGCAAAAAGATC
CATGCCCAGTGGCAGAAAGAGGGAAATGATAAAGATTTTACCTTGAATGATTTTGGCTTCATGATCTTTCACTCACCATA
TTGTAAACTGGTTCAGAAATCTCTAGCTCGGATGTTGCTGAATGACTTCCTTAATGACCAGAATAGAGATAAAAATAGTA
TCTATAGTGGCCTGGAAGCCTTTGGGGATGTTAAATTAGAAGACACCTACTTTGATAGAGATGTGGAGAAGGCATTTATG
AAGGCTAGCTCTGAACTCTTCAGTCAGAAAACAAAGGCATCTTTACTTGTATCAAATCAAAATGGAAATATGTACACATC
TTCAGTATATGGTTCCCTTGCATCTGTTCTAGCACAGTACTCACCTCAGCAATTAGCAGGGAAGAGAATTGGAGTGTTTT
CTTATGGTTCTGGTTTGGCTGCCACTCTGTACTCTCTTAAAGTCACACAAGATGCTACACCGGGGTCTGCTCTTGATAAA
ATAACAGCAAGTTTATGTGATCTTAAATCAAGGCTTGATTCAAGAACTGGTGTGGCACCAGATGTCTTCGCTGAAAACAT
GAAGCTCAGAGAGGACACCCATCATTTGGTCAACTATATTCCCCAGGGTTCAATAGATTCACTCTTTGAAGGAACGTGGT
ACTTAGTTAGGGTGGATGAAAAGCACAGAAGAACTTACGCTCGGCGTCCCACTCCAAATGATGACACTTTGGATGAAGGA
GTAGGACTTGTGCATTCAAACATAGCAACTGAGCATATTCCAAGCCCTGCCAAGAAAGTACCAAGACTCCCTGCCACAGC
AGCAGAACCTGAAGCAGCTGTCATTAGTAATGGGGAACATTAA

Library Parental gene expression (RPM)
bodymap2_liver 224 .71 RPM
bodymap2_lung 146 .13 RPM
bodymap2_breast 39 .40 RPM
bodymap2_adipose 30 .04 RPM
bodymap2_adrenal 40 .12 RPM
bodymap2_skeletal_muscle 7 .08 RPM
bodymap2_thyroid 50 .84 RPM
bodymap2_prostate 29 .88 RPM
bodymap2_colon 19 .36 RPM
bodymap2_testis 53 .13 RPM
bodymap2_brain 163 .35 RPM
bodymap2_heart 19 .49 RPM
bodymap2_white_blood_cells 26 .83 RPM
bodymap2_lymph_node 16 .83 RPM
bodymap2_ovary 180 .82 RPM
bodymap2_kidney 65 .95 RPM



Species Parental gene accession Homology type Retrogenes number
Callithrix jacchus ENSCJAG00000001303 ortholog_one2one 1 retrogene
retro_cjac_1754,
Echinops telfairi ENSETEG00000003583 ortholog_one2one 1 retrogene
retro_etel_526,
Pongo abelii ENSPPYG00000015439 ortholog_one2one 1 retrogene
retro_pabe_361,
Pan troglodytes ENSPTRG00000016845 ortholog_one2one 1 retrogene
retro_ptro_265,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_hsap_328 77.76 93.65
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Download FASTA sequences of all ENSG00000112972 retrocopies