Parental gene:

CLK3, ENSG00000179335

Aliases:CLK3, PHCLK3, PHCLK3/152
Description:CDC-like kinase 3 [Source:HGNC Symbol;Acc:2071]
Organism:Human (Homo sapiens)
Coordinates:15:74890840..74932057(+)


>ENSG00000179335
ATGCCCGTCCTCTCCGCGCGCAGGAGGGAGTTGGCGGACCACGCGGGGTCGGGGCGACGGAGCGGGCCCAGCCCCACGGC
CAGGTCGGGGCCCCACCTCTCGGCTCTGAGAGCCCAGCCGGCCCGGGCCGCGCACCTGTCAGGTCGGGGGACCTACGTGC
GCCGCGACACGGCGGGAGGCGGGCCGGGCCAGGCTCGTCCCCTCGGCCCTCCCGGAACTAGTCTCCTAGGCCGCGGCGCC
CGCCGGAGCGGAGAGGGCTGGTGCCCCGGAGCCTTCGAGTCGGGGGCTAGAGCGGCCAGGCCTCCGAGCCGGGTCGAGCC
GAGGCTGGCGACGGCTGCGTCACGCGAGGGGGCGGGGCTGCCACGGGCGGAGGTCGCAGCCGGAAGCGGAAGAGGCGCTC
GGAGCGGGGAGTGGGGCCTAGCTGCAGCCGGAGCCTGGGAGACGATGCATCACTGTAAGCGATACCGCTCCCCTGAACCA
GACCCGTACCTGAGCTACCGATGGAAGAGGAGGAGGTCCTACAGTCGGGAACATGAAGGGAGACTGCGATACCCGTCCCG
AAGGGAGCCTCCCCCACGAAGATCTCGGTCCAGAAGCCATGACCGCCTGCCCTACCAGAGGAGGTACCGGGAGCGCCGTG
ACAGCGATACATACCGGTGTGAAGAGCGGAGCCCATCCTTTGGAGAGGACTACTATGGACCTTCACGTTCTCGTCATCGT
CGGCGATCGCGGGAGAGGGGGCCATACCGGACCCGCAAGCATGCCCACCACTGCCACAAACGCCGCACCAGGTCTTGTAG
CAGCGCCTCCTCGAGAAGCCAACAGAGCAGTAAGCGCAGCAGCCGGAGTGTGGAAGATGACAAGGAGGGTCACCTGGTGT
GCCGGATCGGCGATTGGCTCCAAGAGCGATATGAGATTGTGGGGAACCTGGGTGAAGGCACCTTTGGCAAGGTGGTGGAG
TGCTTGGACCATGCCAGAGGGAAGTCTCAGGTTGCCCTGAAGATCATCCGCAACGTGGGCAAGTACCGGGAGGCTGCCCG
GCTAGAAATCAACGTGCTCAAAAAAATCAAGGAGAAGGACAAAGAAAACAAGTTCCTGTGTGTCTTGATGTCTGACTGGT
TCAACTTCCACGGTCACATGTGCATCGCCTTTGAGCTCCTGGGCAAGAACACCTTTGAGTTCCTGAAGGAGAATAACTTC
CAGCCTTACCCCCTACCACATGTCCGGCACATGGCCTACCAGCTCTGCCACGCCCTTAGATTTCTGCATGAGAATCAGCT
GACCCATACAGACTTGAAACCAGAGAACATCCTGTTTGTGAATTCTGAGTTTGAAACCCTCTACAATGAGCACAAGAGCT
GTGAGGAGAAGTCAGTGAAGAACACCAGCATCCGAGTGGCTGACTTTGGCAGTGCCACATTTGACCATGAGCACCACACC
ACCATTGTGGCCACCCGTCACTATCGCCCGCCTGAGGTGATCCTTGAGCTGGGCTGGGCACAGCCCTGTGACGTCTGGAG
CATTGGCTGCATTCTCTTTGAGTACTACCGGGGCTTCACACTCTTCCAGACCCACGAAAACCGAGAGCACCTGGTGATGA
TGGAGAAGATCCTAGGGCCCATCCCATCACACATGATCCACCGTACCAGGAAGCAGAAATATTTCTACAAAGGGGGCCTA
GTTTGGGATGAGAACAGCTCTGACGGCCGGTATGTGAAGGAGAACTGCAAACCTCTGAAGAGTTACATGCTCCAAGACTC
CCTGGAGCACGTGCAGCTGTTTGACCTGATGAGGAGGATGTTAGAATTTGACCCTGCCCAGCGCATCACACTGGCCGAGG
CCCTGCTGCACCCCTTCTTTGCTGGCCTGACCCCTGAGGAGCGGTCCTTCCACACCAGCCGCAACCCAAGCAGATGA

Library Parental gene expression (RPM)
bodymap2_liver 9 .06 RPM
bodymap2_lung 41 .54 RPM
bodymap2_breast 19 .96 RPM
bodymap2_adipose 22 .82 RPM
bodymap2_adrenal 36 .25 RPM
bodymap2_skeletal_muscle 26 .23 RPM
bodymap2_thyroid 27 .98 RPM
bodymap2_prostate 35 .11 RPM
bodymap2_colon 24 .56 RPM
bodymap2_testis 33 .31 RPM
bodymap2_brain 12 .89 RPM
bodymap2_heart 13 .50 RPM
bodymap2_white_blood_cells 37 .03 RPM
bodymap2_lymph_node 48 .75 RPM
bodymap2_ovary 19 .78 RPM
bodymap2_kidney 17 .21 RPM



Species Parental gene accession Homology type Retrogenes number
Homo sapiens ENSG00000112739 within_species_paralog 1 retrogene
retro_hsap_4212,
Homo sapiens ENSG00000176444 within_species_paralog 1 retrogene
retro_hsap_3827,
Macaca mulatta ENSMMUG00000011069 ortholog_one2one 1 retrogene
retro_mmul_457,
Pan troglodytes ENSPTRG00000007278 ortholog_one2one 1 retrogene
retro_ptro_405,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_hsap_540 63.92 53.76
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Download FASTA sequences of all ENSG00000179335 retrocopies