Parental gene:

ATP5B, ENSLACG00000009340

Aliases:None
Description:ATP synthase subunit beta [Source:UniProtKB/TrEMBL;Acc:H3ALT2]
Organism:Coelacanth (Latimeria chalumnae)
Coordinates:JH126962.1:413245..420329(-)


>ENSLACG00000009340
ATGGAACTGATCAACAATGTTGCTAAGGCCCATGGTGGTTACTCTGTGTTTGCAGGTGTCGGGGAACGAACCCGTGAGGG
TAATGATTTGTACCATGAAATGATTGAGTCTGGTGTGATCAACCTGAAAGATACTACCTCAAAGGTAGCACTGGTGTATG
GACAGATGAATGAGCCTCCTGGTGCTCGTGCGAGAGTTGCTCTGACTGGTCTAACTGTTGCAGAATATTTCCGTGATCAA
GAAGGACAGGATGTGCTGCTTTTTATTGACAACATCTTCAGATTCACCCAGGCTGGGTCAGAGGTATCTGCCCTTCTGGG
TCGTATTCCCTCTGCTGTAGGGTACCAGCCAACACTGGCTACTGATATGGGTACCATGCAGGAAAGAATTACAACTACCA
AAAAGGGATCCATCACATCAGTACAGGCCATCTATGTGCCTGCTGATGACTTGACTGATCCTGCTCCTGCTACCACTTTT
GCTCACTTGGATGCTACAACTGTGTTGTCCCGTGCTATTGCAGAATTGGGTATTTACCCAGCTGTAGACCCATTAGACTC
TACTTCCCGTATCCTGGACCCCAATATTGTAGGACAAGAGCATTATGATGTGGCTCGTGGTGTGCAGAAGATCTTGCAGG
ATTACAAGTCACTCCAGGATATCATTGCAATCTTGGGTATGGATGAGCTATCTGAGGAAGACAAGTTGACTGTAGCCCGT
GCTCGTAAAATTCAGCGTTTCCTGTCCCAACCTTTCCAAGTTGCTGAAGTTTTCACAGGCCACCTTGGAAAACTGGTACC
TCTAAAGGATACAATTAAGGGGTTCAAGAGCATCCTTGGTGGTGAATATGACCATCTACCAGAACAGGCTTTCTACATGG
TTGGACCTATTGAGGAAGTTGTTGCTAAGGCTGAGAAGCTGGCTGAGGAGCATGCATAA

Library Parental gene expression (RPM)
DRP000627_gill 82 .22 RPM
DRP000627_kidney 101 .52 RPM
DRP000627_pectoral_fin 116 .33 RPM
DRP000627_pelvic_fin 166 .60 RPM
DRP000627_pharynx 104 .41 RPM
DRP000627_tail_muscle 86 .33 RPM



Species Parental gene accession Homology type Retrogenes number
Echinops telfairi ENSETEG00000010208 possible_ortholog 1 retrogene
retro_etel_2162,
Macaca mulatta ENSMMUG00000001027 possible_ortholog 1 retrogene
retro_mmul_103,
Xenopus tropicalis ENSXETG00000024665 ortholog_one2one 1 retrogene
retro_xtro_68,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_lcha_27 68.62 59.62
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Download FASTA sequences of all ENSLACG00000009340 retrocopies