RetrogeneDB ID: | retro_etel_2162 | ||
Retrocopylocation | Organism: | Lesser hedgehog tenrec (Echinops telfairi) | |
Coordinates: | scaffold_81454:696..1496(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSETEG00000004534 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSETEG00000010208 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 79.93 % |
Parental protein coverage: | 50.38 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | ASGALRGLSPSASLPQAQFLLRAA-PAALQPGRDYAAQTSPSPKAGTATGRIVAVIGAVVDVQFDEGLPP |
A..AL.GL.PS.SL...Q.LL.A..PA.LQP.RDY.AQTSPSPKAGTAT.RIV..I..VVDVQFD.G.PP | |
Retrocopy | AASALHGLGPSTSLH*VQLLLWAT<PAVLQPSRDYTAQTSPSPKAGTATARIVTAIRDVVDVQFDNGVPP |
Parental | --ILNALEVQGRDTRLVLEVAQHLGESTVRTIAMDGTEGLVRGQKVLDSGAPIKIPVGPETLGRIMNVIG |
..IL.ALEV....TRLVL.VAQHLGE.....IAMDGTEGLVRGQK.LDSGAPIKIPVGPETLGRIM.VIG | |
Retrocopy | TPILTALEVKCGYTRLVLDVAQHLGENKDH-IAMDGTEGLVRGQKILDSGAPIKIPVGPETLGRIMSVIG |
Parental | EPIDERGPIKTKQFAPIHAEAPEFMEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMEL |
EPIDERGPIKTK.F.P.HAEAPEF.EMSVEQEILVTGIKVVDLLAPYAKGG.IGLFGGA.VGK.VLIMEL | |
Retrocopy | EPIDERGPIKTKPFTPLHAEAPEFVEMSVEQEILVTGIKVVDLLAPYAKGGNIGLFGGAAVGKMVLIMEL |
Parental | INNVAKAHGGYSVFAGVGERTREGNDLYHEMIESGVINLKDTTSKVALVYGQMNEPPGA |
INNV.K.HGGYSVFA.VG...RE.NDLYHE..ESGVIN.KDTTSKVALVYGQMNEPPGA | |
Retrocopy | INNVTKVHGGYSVFASVGKWIREDNDLYHETSESGVINVKDTTSKVALVYGQMNEPPGA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Anolis carolinensis | ENSACAG00000016752 | 1 retrocopy | |
Bos taurus | ENSBTAG00000013315 | 1 retrocopy | |
Choloepus hoffmanni | ENSCHOG00000005350 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000033571 | 2 retrocopies | |
Dasypus novemcinctus | ENSDNOG00000011289 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000010208 | 1 retrocopy |
retro_etel_2162 ,
|
Homo sapiens | ENSG00000110955 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000011596 | 1 retrocopy | |
Latimeria chalumnae | ENSLACG00000009340 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000002875 | 6 retrocopies | |
Microcebus murinus | ENSMICG00000001084 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000001027 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000004668 | 2 retrocopies | |
Pan troglodytes | ENSPTRG00000005107 | 1 retrocopy | |
Sus scrofa | ENSSSCG00000000405 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000009962 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000002144 | 1 retrocopy | |
Vicugna pacos | ENSVPAG00000004025 | 2 retrocopies | |
Xenopus tropicalis | ENSXETG00000024665 | 1 retrocopy |