Parental gene:

SNRPD1, ENSMMUG00000003992

Aliases:None
Description:small nuclear ribonucleoprotein Sm D1 [Source:RefSeq peptide;Acc:NP_001247758]
Organism:Rhesus macaque (Macaca mulatta)
Coordinates:18:14605476..14621030(+)


>ENSMMUG00000003992
ATGAAGCTCGTGAGATTTTTGATGAAATTGAGTCATGAAACTGTAACCATTGAATTGAAGAACGGAACACAGGTCCATGG
AACAATCACAGGTGTGGATGTCAGCATGAATACACATCTTAAAGCTGTGAAAATGACCCTGAAGAACAGAGAACCTGTAC
AGCTGGAAACGCTGAGTATTCGAGGAAATAACATTCGGTATTTTATTCTACCAGACAGTTTACCTCTGGATACACTACTT
GTGGATGTTGAACCTAAGGTGAAATCTAAGAAAAGAGAAGCTGTTGCAGGAAGAGGCAGAGGCAGAGGAAGAGGAAGAGG
ACGTGGCCGTGGCAGAGGAAGAGGGGGTCCTAGGCGATAA

Library Parental gene expression (RPM)
SRP007412_brain 14 .12 RPM
SRP007412_brain_prefrontal_cortex 11 .82 RPM
SRP007412_cerebellum 14 .40 RPM
SRP007412_heart 9 .01 RPM
SRP007412_kidney 11 .15 RPM
SRP007412_liver 4 .51 RPM
SRP007412_testis 15 .42 RPM



Species Parental gene accession Homology type Retrogenes number
Anolis carolinensis ENSACAG00000006364 ortholog_one2one 1 retrogene
retro_acar_129,
Bos taurus ENSBTAG00000008292 possible_ortholog 3 retrogenes
retro_btau_144, retro_btau_706, retro_btau_84,
Canis familiaris ENSCAFG00000018247 ortholog_one2one 1 retrogene
retro_cfam_373,
Dasypus novemcinctus ENSDNOG00000018773 ortholog_one2one 4 retrogenes
retro_dnov_1254, retro_dnov_1716, retro_dnov_1832, retro_dnov_2403,
Felis catus ENSFCAG00000012352 ortholog_one2one 1 retrogene
retro_fcat_1885,
Mustela putorius furo ENSMPUG00000005567 possible_ortholog 1 retrogene
retro_mputfur_185,
Oryctolagus cuniculus ENSOCUG00000023761 possible_ortholog 1 retrogene
retro_ocun_224,
Pongo abelii ENSPPYG00000025874 ortholog_one2one 3 retrogenes
retro_pabe_254, retro_pabe_948, retro_pabe_952,
Pan troglodytes ENSPTRG00000009909 ortholog_one2one 2 retrogenes
retro_ptro_291, retro_ptro_781,
Pteropus vampyrus ENSPVAG00000005511 ortholog_one2one 1 retrogene
retro_pvam_450,
Rattus norvegicus ENSRNOG00000013714 ortholog_one2one 2 retrogenes
retro_rnor_2671, retro_rnor_2729,
Tursiops truncatus ENSTTRG00000002654 ortholog_one2one 2 retrogenes
retro_ttru_1566, retro_ttru_1890,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_mmul_887 74.51 84.03
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2. retro_mmul_891 68.81 89.92
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Download FASTA sequences of all ENSMMUG00000003992 retrocopies