Parental gene:

MMU.1255, ENSMMUG00000008784

Aliases:None
Description:lipopolysaccharide-induced TNF factor [Source:RefSeq peptide;Acc:NP_001245110]
Organism:Rhesus macaque (Macaca mulatta)
Coordinates:20:11615607..11738839(-)


>ENSMMUG00000008784
ATGTCGGTTCCAGGACCTTACCAGGCGGCCACTGGGCCTTCCGCAGCGCCATCTGCACCTCCATCCTATGAAGAGACAGT
GGCTGTTAACAGTTATTACCCCACGCCTCCAGCTCCCATGCCTGGGCCAACTACGGGGCTTGTGACAGGGCCTGATGGGA
AGGGCATGAATCCTCCTTCGTATTTTACCCAGGCAGCGCCCATCCCCAATAACAATCCAATTACCGTGCAGACGGTCTAT
GTGCAGCACCCCATCTCCTTTCTGGACCGCCCTGTTCAAATGTGTTGTCCCTCCTGCAACAAGATGATCGTGAGTCAGCT
GTCCTATAATGCCGGTGCCCTGACCTGGCTGTCCTGCGGGAGCCTGTGCCTGCTGGGAGTGCGTAGCGGGCTGCTGCTTC
ATCCCCTTCTGCGTGGACGCCCTGCAGGACGTGGACCATTACTGTCCCAACTGCAGAGCTCTCCTGGGCACCTACAAGCG
TTTGTAGGACTCAGCCAGACGTGGAGGGAGCCGGGTGCCGCAGGAAGTCCTTTCCACCTCTCATCAAGCTTCACACCTGG
TGGAGGTTCTGCCCTGGTGGTCTCACCTCTCCAGGGGGCCCACCTTCATGTCTTCTTCTGGGGGGAAGTCGCAAAACTAA
CAAACCTCCAAACCCCAAAAATTGCTGCTTGGAGTCGTGCATAG

Library Parental gene expression (RPM)
SRP007412_brain 18 .38 RPM
SRP007412_brain_prefrontal_cortex 29 .03 RPM
SRP007412_cerebellum 14 .46 RPM
SRP007412_heart 35 .15 RPM
SRP007412_kidney 34 .86 RPM
SRP007412_liver 42 .24 RPM
SRP007412_testis 6 .22 RPM



Species Parental gene accession Homology type Retrogenes number
Cavia porcellus ENSCPOG00000006659 ortholog_one2one 1 retrogene
retro_cpor_704,
Monodelphis domestica ENSMODG00000005014 ortholog_one2many 4 retrogenes
retro_mdom_174, retro_mdom_574, retro_mdom_887, retro_mdom_911,
Otolemur garnettii ENSOGAG00000028239 ortholog_one2one 2 retrogenes
retro_ogar_1479, retro_ogar_2820,
Pteropus vampyrus ENSPVAG00000009213 ortholog_one2one 1 retrogene
retro_pvam_261,
Rattus norvegicus ENSRNOG00000002520 ortholog_one2one 1 retrogene
retro_rnor_2056,
Tupaia belangeri ENSTBEG00000017097 ortholog_one2one 1 retrogene
retro_tbel_4388,
Tursiops truncatus ENSTTRG00000010854 ortholog_one2one 1 retrogene
retro_ttru_1244,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_mmul_1411 84.44 78.85
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Download FASTA sequences of all ENSMMUG00000008784 retrocopies