Parental gene: | Tnfaip1, ENSMUSG00000017615 |
| Aliases: | Tnfaip1, Edp-1, Edp1, Tnfip1 |
| Description: | tumor necrosis factor, alpha-induced protein 1 (endothelial) [Source:MGI Symbol;Acc:MGI:104961] |
| Organism: | Mouse (Mus musculus) |
| Coordinates: | 11:78522849..78536332(-) |
>ENSMUSG00000017615
ATGTCAGGGGACACCTGTCTGTGTCCAGCCTCGGGGGCCAAGCCCAAGATCAGTGGCTTCAAGGGAGGCGGGCTGGGCAA
CAAGTACGTGCAGCTCAATGTGGGAGGCTCCCTGTACTACACCACAGTGCGGGCCCTCACCCGGCACGACACCATGCTCA
AGGCCATGTTCAGTGGGCGAATGGAGGTGCTGACTGACAAAGAAGGCTGGATTCTCATAGACCGATGTGGAAAGCACTTT
GGCACCATCTTGAATTACCTCCGAGATGACACCATCACCCTCCCTCAAAGCCGGCAAGAAATCCAGGAGTTGATGGCTGA
AGCAAAATATTACCTCATTCAAGGGCTGGTGAGCACGTGCCAGACTGCCCTGCAGGACAAGAAAGACTCCTACCAGCCTG
TGTGCAACATCCCCATCATCACGTCCCTGAGGGAGGAGGACAGGCTCATTGAATCCTCCACAAAGCCTGTGGTGAAGCTG
CTGTACAACAGGAGCAACAACAAGTACTCATACACCAGCAACTCTGATGATCACCTGCTAAAGAACATTGAACTGTTTGA
CAAGCTGTCCCTGCGCTTCAACGGCCGCGTGCTCTTCATCAAGGATGTCATTGGGGACGAGATCTGCTGCTGGTCTTTCT
ATGGCCAGGGCCGTAAGCTGGCAGAGGTGTGCTGCACCTCGATTGTGTACGCCACAGAGAAGAAGCAGACCAAGGTGGAA
TTCCCAGAGGCCCGTATCTATGAGGAAACACTCAATGTCCTACTCTATGAGACCCCTCGAGTCCCTGACAATTCCTTACT
GGAGGCCACAAGCCGGAGCCGCAGCCAGGCTTCCCCCAGTGAAGATGAAGACACCTTTGAACTACGGGACCGTGTCCGTC
GCATTCATGTCAAGCGCTATAGCACTTACGATGACCGGCAACTTGGCCATCAGTCCACTCATCGTGACTGA
ATGTCAGGGGACACCTGTCTGTGTCCAGCCTCGGGGGCCAAGCCCAAGATCAGTGGCTTCAAGGGAGGCGGGCTGGGCAA
CAAGTACGTGCAGCTCAATGTGGGAGGCTCCCTGTACTACACCACAGTGCGGGCCCTCACCCGGCACGACACCATGCTCA
AGGCCATGTTCAGTGGGCGAATGGAGGTGCTGACTGACAAAGAAGGCTGGATTCTCATAGACCGATGTGGAAAGCACTTT
GGCACCATCTTGAATTACCTCCGAGATGACACCATCACCCTCCCTCAAAGCCGGCAAGAAATCCAGGAGTTGATGGCTGA
AGCAAAATATTACCTCATTCAAGGGCTGGTGAGCACGTGCCAGACTGCCCTGCAGGACAAGAAAGACTCCTACCAGCCTG
TGTGCAACATCCCCATCATCACGTCCCTGAGGGAGGAGGACAGGCTCATTGAATCCTCCACAAAGCCTGTGGTGAAGCTG
CTGTACAACAGGAGCAACAACAAGTACTCATACACCAGCAACTCTGATGATCACCTGCTAAAGAACATTGAACTGTTTGA
CAAGCTGTCCCTGCGCTTCAACGGCCGCGTGCTCTTCATCAAGGATGTCATTGGGGACGAGATCTGCTGCTGGTCTTTCT
ATGGCCAGGGCCGTAAGCTGGCAGAGGTGTGCTGCACCTCGATTGTGTACGCCACAGAGAAGAAGCAGACCAAGGTGGAA
TTCCCAGAGGCCCGTATCTATGAGGAAACACTCAATGTCCTACTCTATGAGACCCCTCGAGTCCCTGACAATTCCTTACT
GGAGGCCACAAGCCGGAGCCGCAGCCAGGCTTCCCCCAGTGAAGATGAAGACACCTTTGAACTACGGGACCGTGTCCGTC
GCATTCATGTCAAGCGCTATAGCACTTACGATGACCGGCAACTTGGCCATCAGTCCACTCATCGTGACTGA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP007412_brain | 47 .89 RPM |
| SRP007412_cerebellum | 55 .97 RPM |
| SRP007412_heart | 80 .47 RPM |
| SRP007412_kidney | 68 .05 RPM |
| SRP007412_liver | 42 .87 RPM |
| SRP007412_testis | 20 .31 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Dasypus novemcinctus | ENSDNOG00000010870 | ortholog_one2one | 1 retrogene | |
| Monodelphis domestica | ENSMODG00000019235 | ortholog_one2one | 1 retrogene | |
| Pan troglodytes | ENSPTRG00000008912 | ortholog_one2one | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_mmus_3457 | 53.85 | 52.85 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_mmus_3615 | 55.03 | 52.85 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSMUSG00000017615 retrocopies