Parental gene:

MRPS18B, ENSOCUG00000002149

Aliases:None
Description:mitochondrial ribosomal protein S18B [Source:HGNC Symbol;Acc:14516]
Organism:Rabbit (Oryctolagus cuniculus)
Coordinates:12:22663229..22668796(+)


>ENSOCUG00000002149
ATGGCGGCCTCCGTATTGAACACGCTGCTGTGGCGGGTTCCTAGACTTTCGCTTTTCAGAAGTGCCTACGGAGTTCAGGT
GCCCTTCCAGACTCTTTGCACCAAAGCCCCCCCTGAGAAAGATTCTTTGCCCACTGGTCCCATTTCCCCGTATAAGGATG
AACCCTGGAAATACCTGGACTCAGAAGAATACCAGAACCGCTATGGTTCTCGCCCGGTCTGGGCTGACTACCGCCGCAAC
CACAAAGGTGGGGTACCCCCACAGCGGACTCGAAAGACATGTATTCGTAAGGATAAAATCGCCGGGAATCCCTGCCCCAT
CTGTCGGGATCACAAGTTGCACGTGGACTTCAGGAACGTGAAGCTCTTGGAACAGTTTGTCTGCGCCCACACGGGTATCA
TCTTCCATGCTCCATACACAGGAGTCTGTATGAAGCAGCACAAGAAGTTGACCCAGGCCATCCAGAAAGCCAGAGATCAC
GGTCTCCTCAGGTACCACATTCCCCAGGTTGAGCCCCGGGACCTTGACTTCAGTACCTCTCACGGAGCTGTGAGTGCCAC
TCCACCAGCCCCCACCCTGGTTTCCGGCGATCCCTGGTACCCGTGGTACAGCTGGACACAGCCACCAGAGAGAGAACTGT
CCCGCCTTCGGCGGCTCTATCAGGGCCATCTCCGAGAAGAGAGCGGCCCTCCGCCTGCAGCACCAGCAGAAGCCCCCTCC
AGTGAGGGGGCGGGCTCCCAGAGTGCTCTG

Library Parental gene expression (RPM)
SRP017611_brain 10 .76 RPM
SRP017611_kidney 28 .18 RPM
SRP017611_liver 7 .25 RPM



Species Parental gene accession Homology type Retrogenes number
Choloepus hoffmanni ENSCHOG00000005581 ortholog_one2one 1 retrogene
retro_chof_505,
Macropus eugenii ENSMEUG00000012457 ortholog_one2one 10 retrogenes
retro_meug_1183, retro_meug_2004, retro_meug_2124, retro_meug_215, retro_meug_610, retro_meug_648, retro_meug_696, retro_meug_712, retro_meug_717, retro_meug_734,
Macaca mulatta ENSMMUG00000006525 ortholog_one2one 1 retrogene
retro_mmul_900,
Monodelphis domestica ENSMODG00000015933 ortholog_one2one 1 retrogene
retro_mdom_426,
Mus musculus ENSMUSG00000024436 ortholog_one2one 1 retrogene
retro_mmus_2036,
Nomascus leucogenys ENSNLEG00000005224 ortholog_one2one 1 retrogene
retro_nleu_1811,
Pongo abelii ENSPPYG00000016412 ortholog_one2one 1 retrogene
retro_pabe_2050,
Pan troglodytes ENSPTRG00000017932 ortholog_one2one 1 retrogene
retro_ptro_1648,
Rattus norvegicus ENSRNOG00000000804 ortholog_one2one 1 retrogene
retro_rnor_1328,
Ictidomys tridecemlineatus ENSSTOG00000011853 ortholog_one2one 1 retrogene
retro_itri_254,
Tarsius syrichta ENSTSYG00000003333 ortholog_one2one 1 retrogene
retro_tsyr_1769,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ocun_1307 78.88 100.00
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2. retro_ocun_1641 95.85 96.00
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Download FASTA sequences of all ENSOCUG00000002149 retrocopies