Parental gene: | SHOC2, ENSPPYG00000002651 |
| Aliases: | None |
| Description: | Leucine-rich repeat protein SHOC-2 [Source:UniProtKB/Swiss-Prot;Acc:Q5RAV5] |
| Organism: | Orangutan (Pongo abelii) |
| Coordinates: | 10:110270086..110365412(+) |
>ENSPPYG00000002651
ATGAGTAGTAGTTTAGGAAAAGAAAAAGACTCTAAAGAAAAAGATCCCAAAGTACCATCAGCCAAGGAAAGAGAAAAGGA
GGCAAAAGCCTCTGGAGGTTTTGGGAAAGAGAGCAAAGAAAAAGAACCTAAGACCAAAGGGAAAGATGCCAAAGATGGAA
AGAAGGACTCCAGTGCTGCCCAACCAGGGGTGGCATTTTCAGTTGACAATACGATTAAACGGCCAAACCCAGCACCTGGG
ACTAGAAAAAAATCCAGCAATGCAGAGGTGATTAAAGAGCTCAACAAATGCCGGGAAGAGAATTCCATGCGTTTGGACTT
ATCCAAGAGATCTATACACATATTGCCATCATCAATCAAAGAGTTGACTCAATTAACAGAACTTTATTTATACAGTAACA
AATTGCAGTCCCTCCCAGCAGAGGTGGGATGTTTAGTAAATCTCATGACACTGGCTCTAAGTGAAAATTCACTTACCAGT
TTGCCTGACTCTCTTGATAACTTGAAGAAGCTGCGGATGCTTGATTTACGGCATAATAAACTGAGAGAAATTCCTTCAGT
GGTGTATAGGCTGGATTCTCTCACCACTCTTTACCTTCGCTTTAATCGTATAACTACTGTGGAAAAGGACATCAAAAACT
TGTCAAAACTCAGCATGCTTAGCATTCGAGAGAACAAAATTAAACAACTACCTGCTGAAATTGGTGAATTATGTAACCTC
ATTACGCTGGATGTAGCTCACAATCAACTTGAACACCTTCCAAAGGAGATTGGAAACTGTACGCAGATAACCAACCTTGA
CTTGCAGCACAATGAACTGCTAGACCTCCCAGATACTATAGGAAACCTGTCCAGTTTAAGTCGTCTTGGTCTGAGATATA
ACAGACTGTCAGCAATACCCAGATCATTAGCAAAATGCAGTGCACTTGAAGAATTAAATTTAGAGAACAATAACATTTCT
ACTTTACCAGAGAGTCTTTTATCAAGTCTTGTGAAACTGAATAGTTTGACCTTAGCTAGAAATTGCTTCCAGTTATATCC
AGTGGGTGGTCCATCTCAGTTTTCTACCATCTATTCCCTCAACATGGAACACAATCGAATAAATAAAATTCCATTTGGAA
TTTTCTCCAGAGCAAAAGTATTAAGTAAGCTGAATATGAAGGACAATCAGTTAACATCACTTCCCTTGGATTTTGGAACT
TGGACCAGTATGGTAGAATTAAATTTAGCCACTAATCAGCTCACAAAGATCCCTGAGGATGTGTCTGGTCTCGTTTCTCT
TGAGGTTCTTATCTTATCAAACAATCTTCTAAAGAAGCTTCCCCATGGTCTTGGAAACCTTAGGAAGTTAAGAGAGTTGG
ATCTAGAAGAGAACAAATTGGAATCCTTGCCAAATGAAATTGCATATCTTAAGGATTTACAGAAATTAGTCTTGACAAAC
AACCAGTTGACCACTCTTCCCAGAGGCATTGGTCACCTTACTAATCTCACACATCTGGGCCTTGGAGAGAACCTACTTAC
TCACCTTCCTGAAGAAATTGGTACACTGGAGAACCTAGAAGAACTGTATTTGAATGACAACCCCAACCTGCATAGCCTTC
CCTTTGAGCTGGCACTCTGCAGCAAGCTTTCAATCATGAGTATTGAGAACTGTCCACTCAGTCACCTTCCACCTCAGATT
GTTGCTGGGGGGCCTTCTTTCATCATTCAGTTCTTAAAGATGCAGGGTCCATATCGTGCCATGGTCTGA
ATGAGTAGTAGTTTAGGAAAAGAAAAAGACTCTAAAGAAAAAGATCCCAAAGTACCATCAGCCAAGGAAAGAGAAAAGGA
GGCAAAAGCCTCTGGAGGTTTTGGGAAAGAGAGCAAAGAAAAAGAACCTAAGACCAAAGGGAAAGATGCCAAAGATGGAA
AGAAGGACTCCAGTGCTGCCCAACCAGGGGTGGCATTTTCAGTTGACAATACGATTAAACGGCCAAACCCAGCACCTGGG
ACTAGAAAAAAATCCAGCAATGCAGAGGTGATTAAAGAGCTCAACAAATGCCGGGAAGAGAATTCCATGCGTTTGGACTT
ATCCAAGAGATCTATACACATATTGCCATCATCAATCAAAGAGTTGACTCAATTAACAGAACTTTATTTATACAGTAACA
AATTGCAGTCCCTCCCAGCAGAGGTGGGATGTTTAGTAAATCTCATGACACTGGCTCTAAGTGAAAATTCACTTACCAGT
TTGCCTGACTCTCTTGATAACTTGAAGAAGCTGCGGATGCTTGATTTACGGCATAATAAACTGAGAGAAATTCCTTCAGT
GGTGTATAGGCTGGATTCTCTCACCACTCTTTACCTTCGCTTTAATCGTATAACTACTGTGGAAAAGGACATCAAAAACT
TGTCAAAACTCAGCATGCTTAGCATTCGAGAGAACAAAATTAAACAACTACCTGCTGAAATTGGTGAATTATGTAACCTC
ATTACGCTGGATGTAGCTCACAATCAACTTGAACACCTTCCAAAGGAGATTGGAAACTGTACGCAGATAACCAACCTTGA
CTTGCAGCACAATGAACTGCTAGACCTCCCAGATACTATAGGAAACCTGTCCAGTTTAAGTCGTCTTGGTCTGAGATATA
ACAGACTGTCAGCAATACCCAGATCATTAGCAAAATGCAGTGCACTTGAAGAATTAAATTTAGAGAACAATAACATTTCT
ACTTTACCAGAGAGTCTTTTATCAAGTCTTGTGAAACTGAATAGTTTGACCTTAGCTAGAAATTGCTTCCAGTTATATCC
AGTGGGTGGTCCATCTCAGTTTTCTACCATCTATTCCCTCAACATGGAACACAATCGAATAAATAAAATTCCATTTGGAA
TTTTCTCCAGAGCAAAAGTATTAAGTAAGCTGAATATGAAGGACAATCAGTTAACATCACTTCCCTTGGATTTTGGAACT
TGGACCAGTATGGTAGAATTAAATTTAGCCACTAATCAGCTCACAAAGATCCCTGAGGATGTGTCTGGTCTCGTTTCTCT
TGAGGTTCTTATCTTATCAAACAATCTTCTAAAGAAGCTTCCCCATGGTCTTGGAAACCTTAGGAAGTTAAGAGAGTTGG
ATCTAGAAGAGAACAAATTGGAATCCTTGCCAAATGAAATTGCATATCTTAAGGATTTACAGAAATTAGTCTTGACAAAC
AACCAGTTGACCACTCTTCCCAGAGGCATTGGTCACCTTACTAATCTCACACATCTGGGCCTTGGAGAGAACCTACTTAC
TCACCTTCCTGAAGAAATTGGTACACTGGAGAACCTAGAAGAACTGTATTTGAATGACAACCCCAACCTGCATAGCCTTC
CCTTTGAGCTGGCACTCTGCAGCAAGCTTTCAATCATGAGTATTGAGAACTGTCCACTCAGTCACCTTCCACCTCAGATT
GTTGCTGGGGGGCCTTCTTTCATCATTCAGTTCTTAAAGATGCAGGGTCCATATCGTGCCATGGTCTGA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP007412_brain_prefrontal_cortex | 15 .65 RPM |
| SRP007412_cerebellum | 14 .35 RPM |
| SRP007412_heart | 7 .56 RPM |
| SRP007412_kidney | 7 .36 RPM |
| SRP007412_liver | 6 .00 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Myotis lucifugus | ENSMLUG00000013811 | ortholog_one2one | 1 retrogene | |
| Oryctolagus cuniculus | ENSOCUG00000014348 | ortholog_one2one | 1 retrogene | |
| Pongo abelii | ENSPPYG00000013932 | other_paralog | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_pabe_252 | 98.92 | 95.70 | Please wait, loading  | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSPPYG00000002651 retrocopies