Parental gene:

SARNP, ENSPPYG00000004630

Aliases:SARNP, CIP29, HCC1
Description:SAP domain-containing ribonucleoprotein [Source:UniProtKB/Swiss-Prot;Acc:Q5R4V4]
Organism:Orangutan (Pongo abelii)
Coordinates:12:55508102..55569328(-)


>ENSPPYG00000004630
ATGGCGACCGAGACGGTGGAGCTTCATAAGCTAAAGCTTGCTGAACTAAAGCAAGAATGTCTTGCTCGTGGTTTGGAGAC
CAAGGGAATAAAGCAAGATCTTATCCACAGACTCCAGGCATATCTTGAAGAACATGCTGAAGAGGAGGCAAATGAAGAAG
ATGTACTGGGAGATGAAACAGAGGAAGAAGAAACAAAGCCCATTGAGCTCCCTGTCAAAGAGGAAGAACCCCCTGAAAAA
ACTGTTGATGTGGCAGCAGAGAAGAAAGTGGTGAAAATTACATCTGAAATACCACAGACTGAGAGAATGCAGAAGAGGGC
TGAACGATTCAATGTACCTGTGAGCTTGGAGAGTAAGAAAGCTGCCCGGGCAGCTAGGTTTGGGATTTCTTCAGTTCCAA
CAAAAGGTCTGTCATCTGATAACAAACCTATGGTTAACTTGGATAAGCTGAAGGAAAGAGCTCAAAGATTTGGTTTGAAT
GTCTCTTCAATCTCCAGAAAGTCTGAAGATGATGAGAAACTGAAAAAGAGGAAGGAGCGATTTGGGATTGTCACAAGTTC
AGCTGGAACTGGAACCACAGAGGATACAGAGGCAAAGAAGAGGAAAAGAGCAGAGCGCTTTGGGATTGCCTGA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 18 .63 RPM
SRP007412_cerebellum 21 .04 RPM
SRP007412_heart 16 .74 RPM
SRP007412_kidney 19 .23 RPM
SRP007412_liver 11 .17 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000011769 ortholog_one2one 2 retrogenes
retro_amel_1602, retro_amel_347,
Bos taurus ENSBTAG00000020662 ortholog_one2many 1 retrogene
retro_btau_202,
Callithrix jacchus ENSCJAG00000007853 ortholog_one2one 8 retrogenes
retro_cjac_1070, retro_cjac_1487, retro_cjac_1801, retro_cjac_2439, retro_cjac_2560, retro_cjac_389, retro_cjac_4139, retro_cjac_731,
Cavia porcellus ENSCPOG00000011755 possible_ortholog 1 retrogene
retro_cpor_1313,
Dipodomys ordii ENSDORG00000001065 ortholog_one2one 1 retrogene
retro_dord_80,
Erinaceus europaeus ENSEEUG00000015176 ortholog_one2one 1 retrogene
retro_eeur_549,
Homo sapiens ENSG00000205323 ortholog_one2one 1 retrogene
retro_hsap_3882,
Gorilla gorilla ENSGGOG00000013217 ortholog_one2one 2 retrogenes
retro_ggor_2613, retro_ggor_2753,
Loxodonta africana ENSLAFG00000015053 ortholog_one2one 1 retrogene
retro_lafr_1024,
Microcebus murinus ENSMICG00000010902 ortholog_one2one 1 retrogene
retro_mmur_358,
Monodelphis domestica ENSMODG00000028949 ortholog_one2one 1 retrogene
retro_mdom_1909,
Mustela putorius furo ENSMPUG00000000885 ortholog_one2one 1 retrogene
retro_mputfur_617,
Mus musculus ENSMUSG00000078427 ortholog_one2many 1 retrogene
retro_mmus_54,
Nomascus leucogenys ENSNLEG00000017599 ortholog_one2one 2 retrogenes
retro_nleu_2779, retro_nleu_569,
Procavia capensis ENSPCAG00000009477 ortholog_one2one 2 retrogenes
retro_pcap_262, retro_pcap_45,
Pan troglodytes ENSPTRG00000029747 ortholog_one2one 2 retrogenes
retro_ptro_2644, retro_ptro_2782,
Rattus norvegicus ENSRNOG00000030520 ortholog_one2one 2 retrogenes
retro_rnor_1326, retro_rnor_471,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_pabe_3116 88.73 100.00
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2. retro_pabe_3358 80.57 82.38
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Download FASTA sequences of all ENSPPYG00000004630 retrocopies