Parental gene: | CTAGE5, ENSPPYG00000005768 |
| Aliases: | None |
| Description: | CTAGE family, member 5 [Source:HGNC Symbol;Acc:7057] |
| Organism: | Orangutan (Pongo abelii) |
| Coordinates: | 14:39110294..39231769(+) |
>ENSPPYG00000005768
ATGGCGAAATTTGGCGTTCACAGAATCCTTCTTCTGGCTATTTATCTGACAAAGTGTCTGGAGAGTACAAAACTGCTGGC
AGACCTTAAAAAATGTGGTGACTTGGAATGTGAAACTTTAATAAGCAGAGTCTCAGCCATGAGAGATTACAGAGGACCTG
ACTGCCGATACCTGAACTTCACTAAGGGAGAAGAGATATCTGTTTATGTGAAACTTGCAGGAGAAAGGGAAGATTTGTGG
GCAGGAAGTAAAGGAACGGAGTTTGGATATTTTCCCAGAGATGCAGTCCAGATTGAAGAGGTGTTCATATCTGAGGAAAT
TCAAATGTCAACTAAAGAATCTGACTTTCTTTGTCTTCTTGGAGTAAGTTACACATTTGACAATGAAGATAGTGAATTAA
ATGGTGATTATGGTGAAAATATATATCCTTATGAAGAAGATAAAGATGAAAAATCTAGTATATATGAAAGTGATTTTCAG
ACAGAACCTGGATTTTATGCAACTTATGAAAGTACTTTGTTTGAAGACCAAGTTCCAGCATTAGAGGCTTCTGAAGATAT
CGGAAGTACCAGTGAATCAAAAGACTGGGAAGAAGTAGTTGTTGAAAGTATGGAACAGGATCATATTCCAGAAGTGCATG
TCCCACCATCTTCAGCTGTGTCTGGAGTCAAAGAATGGTTTGGATTGGGAGGAGAACAAGCTGAAGAGAAGGCTTTTGAA
TCAGTTATTGAACCTGTACAAGAAAGCTCATTTCGGAGTAGAAAAATAGCAGTGGAAGATGAGAATGACCTAGAGGAATT
AAACAATGGTGAGCCTCAAACAGAACATCAGCAAGAATCTGAATCAGAAATTGATTCTGTGCCAAAGACACAGTCTGAAC
TAGCATCTGAGTCAGAACACATTCCCAAACCTCAACCCACTGGTTGGTTTGGTGGTGGATTTACAAGTTATTTAGGTTTT
GGAGATGAGGATACAGGGCTTGAATTAATAGCTGAAGAAAGCAATCCACCACTACAAGATTTCCCCAATTCCATATCATC
TGATAAAGAAGCCACAGTTCCATGTACAGAAATATTAACAGAAAAAAAAGACACAATCACTAATGATAGCTTGAGTCTCA
AGCCAAGTTGGTTTGATTTTGGTTTTGCTATACTAGGCTTTGCATATGCCAAGGAAGATAAAATTATGTTAGATGACAGG
AAAAATGAAGAAGATTGTGGGGCAGATGAACATGAACATCCTCTAACAAGTGAATTAGACCCTGAAAAAGAACAAGAAAT
AGATATGATAAAAATTATAGAAACAGAAGATCAAATAGACAAGAAACCAGTCTTAGAAAAAACAGACAAATCTGATACTA
TGCCATATTTGAAAAAGTTCTTGTATAATTTTGACAACCCTTGGAACTTCCAGAACATTCCAAAGGAAACAGAATTGCCA
TTTCCCAAACAGATACTGGATCAAAATAATGTAATTGAAAATGAAGAAACTGAAGAATTTTCCGTTGATAATTATCCCAC
AGATAATACAAAAGTTATGATGTTCAAAAGTTCATACAGTCTGTCAGAAGATGCTTCTGAGTTTCAGATCAAATACTTAT
TCCAAATTGATGTTTATGATTTCATGAATTCTGCATTTTCACCAATTGTAATTCTTACAGAAAGGGTTGTGGCAGCACTG
CCTGAAGGTATGAGACCAGATTCTAATCCTTATGGTTTTCCATGGGAATTGGTGATATGTGCAGCTGTTGTTGGATTTTT
TGCTGTTCTCTTTTTTTCATGGAGAAGTTTTAGATCGGTGAGTAACCAGTGCTATACTAAGAGAATTCCTGTGTTCTCTG
AGAAGCAGACTTTACTCTTAGAGAATAAAATTCGTAGAGTTTTTACTTGTGATGTTGCTTTGTTTCAGTATGAAGGCTAT
GAAGTAGAGTCATCTTTAAAGAATGCCAGCTTTGAGAAGGAGGCAACAGAAGCACAAAGTTTGGAGGCAACCTGTGAAAA
GCTGAACAGGTCCAATTCTGAACTTGAGGATGAAATACTCTGTCTAGAAAAAGAGTTAAAAGAAGAGAAATCCAAACATT
CTGAACAAGATGAATTGATGGCGGATATTTCAAAAAGGATACAGTCTCTAGAAGATGAGTCAAAATCCCTCAAATCACAA
GTAGCTGAAGCCAAAATGACCTTCAAGATATTTCAAATGAATGAAGAACGACTGAAGATAGCAATAAAAGATGCTTTGAA
TGAAAATTCTGAACTTCAGGAAAGCCAGAAACAGCTTTTGCAAGATGCTGAAGTATGGAAAGAACAAGTGAGTGAACTTA
ATAAACAGAAAGTAACATTTGAAGACTCCAAAGTACACGCAGAACAAGTTCTAAATGATAAAGAAAATCACATCAAGACT
CTGACTGAACGCTTGCTAAAGATGAAAGATTGGGCTGCTATGCTTGGAGAAGACATAACGGATGATGATAACTTGGAATT
AGAAATGAACAGTGAATCGGAAAATGGTGCTTACTTAGATAATCCTCCAAAAGGAGCTTTGAAGAAACTGATTCATGCTG
CTAAGTTAAATGCTTCTTTAAAAACCTTAGAAGGAGAAAGAAACCAAATTTATATTCAGTTATCTGAAGTTGATAAAACA
AAGGAAGAGCTTACAGAGCATATTAAAAATCTTCAGACAGAACAAGCATCTTTGCAGTCAGAAAACACACATTTTGAAAA
TGAGAATCAGAAGCTTCAACAGAAACTTAAAGTAATGACTGAATTATATCAAGAAAATGAAATGAAACTCCACAGGAAAT
TAACAGTAGAGGAAAATTATCGGTTAGAGAAAGAAGAGAAACTTTCTAAAGTAGATGAAAAGATCAGCCATGCCACTGAA
GAGCTGGAGACCTATAGAAAGCGAGCCAAAGATCTTGAAGAAGAATTGGAGAGAACTATTCATTCTTATCAAGGGCAGAT
TATTTCCCATGAGAAAAAAGCACATGATAATTGGTTGGCAGCTCGGAATGCTGAAAGAAACCTCAATGATTTAAGGAAAG
AAAATGCTCACAACAGACAAAAATTAACTGAAACAGAGCTTAAATTTGAACTTTTAGAAAAAGATCCTTATGCACTTGAT
GTTCCAAATACAGCATTTGGCAGAGAGCACTCCCCATATGGTCCCTCACCATTGGGTTGGCCTTCATCTGAAACAAGAGC
TTTTCTCTCTCCTCCAACTTTGTTGGAGGGCCCACTCAGACTCTCACCTTTGCTTCCAGGGGGAGGAGGAAGAGGCTCAC
GAGGCCCAGGGAATCCTCTGGACCATCAGATTACCAATGAAAGAGGAGAATCAAGCTGTGATAGGTTAACCAATCCTCAT
AGGGCTCCCTCTGACACTGGGTCTCTGTCACCTCCATGGGAACAGGACCGTAGGATGATGTTTCCTCCGCCAGGACAATC
ATATCCTGATTCAGCCCTTCCTCCACAAAGGCAAGACAGATTTTGTTCTAATTCTGGTAGACTGTCTGGACCAGCAGAAC
TCAGAAGTTTTAATATGCCTTCTTTGGATAAAATGGATGGGTCAATGCCTTCAGAAATGGAATCCAGTAGAAATGATACC
AAAGATGATCTTGGTAATTTAAATGTGCCTGATTCATCTCTCCCCACTGAAAATGAAGCCACTGGCCCTGGCTTTGTTCC
TCCACCTCTTGCTCCAATCAGAGGTCCATTGTTTCCAGTGGATACAAGAGGCCCATTCTTGAGAAGAGGACCTCCTTTCC
CCCCACCTCCTCCAGGAGCCGTGTTTGGAGCTTCTCGAGATTATTTTCCACCAAGGGATTTCCCAGGTCCACCACATGCT
CCATTTGCAATGAGAAATGTCTATCCACCGAGGGGTTTTCCTCCTTACCTTCCCCCAAGACCTGGATTTTTCCCCCCACC
CCCACATTCTGAAGGTAGAAGTGAGTTCCCTTCAGGTTTGATTCCACCTTCAAATGAGCCTGCTACTGAACATCCAGAAC
CACAGCAAGAAACCTGA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP007412_brain_prefrontal_cortex | 5 .20 RPM |
| SRP007412_cerebellum | 8 .88 RPM |
| SRP007412_heart | 9 .60 RPM |
| SRP007412_kidney | 44 .81 RPM |
| SRP007412_liver | 43 .09 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Callithrix jacchus | ENSCJAG00000016105 | ortholog_one2one | 4 retrogenes | |
| Cavia porcellus | ENSCPOG00000026514 | possible_ortholog | 2 retrogenes | |
| Homo sapiens | ENSG00000150527 | ortholog_one2one | 3 retrogenes | |
| Homo sapiens | ENSG00000258941 | possible_ortholog | 1 retrogene | |
| Gorilla gorilla | ENSGGOG00000011990 | ortholog_one2one | 1 retrogene | |
| Nomascus leucogenys | ENSNLEG00000004121 | possible_ortholog | 10 retrogenes | |
| Pan troglodytes | ENSPTRG00000006297 | possible_ortholog | 10 retrogenes | |
| Ictidomys tridecemlineatus | ENSSTOG00000015890 | possible_ortholog | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_pabe_29 | 84.19 | 51.05 | Please wait, loading  |
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| 2. | retro_pabe_1001 | 83.33 | 58.22 | Please wait, loading |
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| 3. | retro_pabe_1002 | 83.21 | 58.59 | Please wait, loading |
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| 4. | retro_pabe_1007 | 83.95 | 58.59 | Please wait, loading |
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| 5. | retro_pabe_1055 | 83.57 | 59.04 | Please wait, loading |
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| 6. | retro_pabe_1060 | 81.17 | 58.59 | Please wait, loading |
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| 7. | retro_pabe_1588 | 82.83 | 59.04 | Please wait, loading |
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| 8. | retro_pabe_2119 | 81.42 | 58.59 | Please wait, loading |
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| 9. | retro_pabe_3024 | 86.90 | 52.54 | Please wait, loading |
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Download FASTA sequences of all ENSPPYG00000005768 retrocopies