Parental gene:

ENSSTOG00000015890

Aliases:None
Description:None
Organism:Squirrel (Ictidomys tridecemlineatus)
Coordinates:JH393304.1:12805989..12910551(+)


>ENSSTOG00000015890
ATGGCGGAACTTGCTGTTCACAGAATCCTTCTTTTGGTTATTTCACTGACAAAGTGCCTGGAGGGTACAAAACTGCTGGC
AGAACTTAAAAAATGTGGTGACCTGGAATGTGAAACTTTAATAAGCAGAGTTGTAGCCATGAGAGATTACACAGGACCTG
ATTGCCTATTCCTGAACTTCACTAAGGGAGAAGAAATATCTGTTTATGTTAAACTTGCAGGACAAAGAGAAGATTTGTGG
GCAGGAAGTAAAGGAAAGAACTTTGGGTTTTTTCCCAGAGATGCAGTCCAGATTGAAGAGGTATTCATATCTGAAGAGGT
TGAAATATCAACTAAAGAATCTGACTTTCTTTGTCTCCTTGGAGTAAGTTACATATTTGAAAATAAAGATAGGGAGTTTA
ACAGTTACAGTGGTGAAAATATGTATCCATATGAAGAAGAGCAAAAATATAGTATATATGGAAGTGATTTCCAGATAGAA
TCTGAATTTTATGCATTTTCTGACGGCCAATTTCCCACATCAGAGTCTTCTAAAGATATTAGAAATGATTGGGAAGAAGC
CAAAACTGGAAGTGTGAAACAGGATCACGTTCCAGAAGTGGATCATATCTCATCACCCTTAACTGAAGTACAAGGATGGT
TTGGACTGAGAAAGGAACATGGTGAAGAAAAGGCTCTTGAATCAGTCACTGAACCTGTGCAAGGAAGCTCATTTCAAAGT
AGAAAAATAACAGTGGAAGATGAAAATAACCTAGAGGAATTAAATAATGGTGAGCCCCAAACTGAACATAAGCGAGAACC
TGAATCAGAATTTGATTCAGGACCAAAGGAACAGTTGGCACTAGCACTGGAGTCAGAGCATGTACTCAAACCCCAAGCCA
ATGGTTGGTTTGGTGGTGAATTCACAAGTAAATCTGTCCACGATAATGAACAGGAAATAAAAGTGATAAAAACTATGGAA
ACAGAGGATCAAATAGATAAGGAAAAAGTCTTAGAGAAAACAGATGGTTCTTACACCATAGCATATTTTACAAAGTTATT
CTATAATTTTGATAACCCTTGGAGCTTCCAGAACATTCCAAAGGAAACAGAGTTGCCATTTCCCAAACAGATACTGGATC
AAAGTAATATGGTTGAAAATAATGAAAGAGAAGAATTTTCTGGAGAAAATGATCCTATAGATAATATGAAAGATCTCACA
ATGTTGAAAAACAGATATTATCAATCAGAAAATGCTACTGAGTTTCAGATTCTGAAATACATATTTCAAATTAATGTTTA
TGAGTTCGTGAATTCTGCACTTTCACTGGTTATAATTCTTACAGAAAGGGTTGTGGAAACATTGCCTGAAGATATGAGAC
CAGGCCCTAATCCTTATGGCCTTCCGTGGGAGTTGGTGATATATGCAGCTATTGGATTTTTAGCTATTCTCTTGTTTTTG
TGGAGAAGTTTTAAATCTGTTAGAAGCCGGCTTTACATAGGAAGAGAAAAAAAGCTTGCTCTAAAACTTTCTGGACTAAT
TAAAGAAAAATGTGAACTACTTGAAAAAGTTAGCCTTGTTCAAAAAGAGTATGAAGGCTTAGAGTCATCTTTAAAGGATG
CCAGTTTTGAGAAGGAGTCAACAGAAGCACAAAGTTTGGAGGCAACATATGAAAAGCTGGATAGGTCCAAATCTAAACTT
GAGGATGAAATACTCTTTCTAGAAAAAGAGCTAAAAGAAGAGAAATCTAAACATTCTGAACAGGATGAATTGATGGCAGA
TATATCAAAAAGGATACAGTCCCTAGAAGATGAATCAAAATCTCTCAAATCACAAATAGCTGAAGCTAAAACAACCTTCA
AAATATATCAAATGAATGAAGAACGACTTAAGGTAGTAATAAAAGAGGCTTTGAATGAAAATTCCCAACTTCAGGAAAGT
CAGAAACAGCTTTTGCAAGAAGCTGAAGTGTGGAAAGAACAAGTGAGTGACCTTAATAAACAGAAAATTACATTTGAAGA
ATCTAAAGTACATGCAGAACAAGTTCTAAATGATAAAGAAAATCACATTAAGTCTCTGATTGAACGCTTGCTAAAGATGG
AAGACTGGGGTGCTGTGCTTGGAGAAGACCCAACAGATGATGATAACTCGGAATTGGAAATGAACAGTGAATCAGAAGTT
GGTGCTTACTTAGATAATCAGCCAAAAGGAGCTTTGAAGAAAGTGGTTTATGCTGCTAAGTTAAATGCCTCCTTAAAAAC
CTTAGAAGGAGAAAGAAATCAAATTTATACTCAATTATCTGAAGTAGATAAAACAAAGGAAGACCTTATAGAACATATTA
AAAATCTTCAGACTGAGCAAGCATCTTTGCAGTCAGAATATACACAGTTTGAAAGTGAGAATCAGAAGCTTCAGCAGAAA
CTTAAAGTAATGACTGAACTATATCAAGAAAATGAAATGAAACTCCATAGGAAATTAACAGTAGAGGAAAATTACCGGTT
AGAGAAAGAGGAGAAGCTTTCCAAAGTGGATGAAAAGATCAGCCATGCAGCTGAAGAACTGGAGACCTATAGAAAGAGAG
CCAAAGATCTTGAGGAAGAATTGGAGAGAACCATTCATTCTTATCAGGGGCAGATTATTTCCCATGAGAAAAAAGCACAT
GATAATTGGTTGGCAGCTCGGGCAGCTGAAAGAAACCTTAATGATTTAAAGAAAGAAAATGCTCACAACAGACAAAAATT
AACTGAAACAGAGTTTAAATTTGAACTTTTAGAAAAAGATCCTTATGCACTTGATGTTCCAAATACAGCATTTGGCAGAG
AGCATTCCCCATATGGTGCCTCACCATTGGGTCGACCTTCATCCGAAACGAGAGCTTTTCTCTCTCCTCCAACTTTGTTG
GAGGGTCCACTCAGACTCTCACCTTTGCTTCCAGGGGGAGGAGGAAGAGGCTCAAGAGGCCCAGAGAATCCTCTGGACCA
TCAGTTTAGCAATGAAAGGGGAGAATCAAGCTATGATAGGTTAACTGATCCTCATAGAGCACCTTCTGATACTGGGTCCT
TGTCACCTCCATGGGAACAGGATCGTAGGATGATGATTCCTCCACCAGGTCAACCATATTCTGATCCACCTCTTCCTCCA
CAAAGGCAAGATAGATATTATTCTAATTCTGGTAGATTATCTGGACCAGCAGAACTCAGAAGTTTTAATATGCCTTCTTT
GGATAAAGTGGATGGGCCTATGTCTTTAGAAATGGAATCCAGTACAAATGATACCAAAGATGATCTTGATAATTCAAATG
TGCCTGATTCATCTCTGCCTGCTGAAAACCAAGCAACTGGCTCTCGCTTTGGTTTTTCACCTCTTCCTCCAATCCGAGGT
CCATTGTTTCCAGTGGACCCAAGGAGTCATTTCATGAGAAGAGGACCTTCTTTTCCTCCACCTCCTCCACCTCCAGGAAA
CATGTATGGAGCATCCAGAGATTATTTTCTACCTGGCCCACCACCCCCTCTATTCCCAATGAGAAATGCTTATTCACCGA
GGGGTTTTCCTCATTTTCTTCCCCCAAGAGCTGGATTTTTCCCCTCACCCCCACATTCTGAAAGTAGAAGTGAGTTCCCT
TCAGGGTTGATTCCGCCTTCAAATGAGCCTGCTACTGAACATCCAGAACCACAACAAGAAACCTGA

Species Parental gene accession Homology type Retrogenes number
Callithrix jacchus ENSCJAG00000016105 possible_ortholog 4 retrogenes
retro_cjac_1747, retro_cjac_2711, retro_cjac_3217, retro_cjac_921,
Cavia porcellus ENSCPOG00000026514 possible_ortholog 2 retrogenes
retro_cpor_189, retro_cpor_727,
Homo sapiens ENSG00000150527 possible_ortholog 3 retrogenes
retro_hsap_1201, retro_hsap_3691, retro_hsap_640,
Homo sapiens ENSG00000258941 possible_ortholog 1 retrogene
retro_hsap_78,
Gorilla gorilla ENSGGOG00000011990 possible_ortholog 1 retrogene
retro_ggor_936,
Nomascus leucogenys ENSNLEG00000004121 possible_ortholog 10 retrogenes
retro_nleu_1218, retro_nleu_1690, retro_nleu_2087, retro_nleu_2103, retro_nleu_2148, retro_nleu_2600, retro_nleu_2951, retro_nleu_3017, retro_nleu_3077, retro_nleu_688,
Pongo abelii ENSPPYG00000005768 possible_ortholog 9 retrogenes
retro_pabe_1001, retro_pabe_1002, retro_pabe_1007, retro_pabe_1055, retro_pabe_1060, retro_pabe_1588, retro_pabe_2119, retro_pabe_29, retro_pabe_3024,
Pan troglodytes ENSPTRG00000006297 possible_ortholog 10 retrogenes
retro_ptro_1286, retro_ptro_1712, retro_ptro_2503, retro_ptro_2580, retro_ptro_2880, retro_ptro_466, retro_ptro_821, retro_ptro_826, retro_ptro_868, retro_ptro_876,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_itri_95 65.04 58.72
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Download FASTA sequences of all ENSSTOG00000015890 retrocopies