Parental gene: | TRMT1, ENSPPYG00000009622 |
| Aliases: | None |
| Description: | tRNA methyltransferase 1 homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:25980] |
| Organism: | Orangutan (Pongo abelii) |
| Coordinates: | 19:13327193..13340466(-) |
>ENSPPYG00000009622
ATGCAAGGATCGTCTCTGTGGCTAAGCCTCACTTTCCGCTCCGCCCGGGTGCTCTGTAGAGCCCGGTTTTTCGAGTGGCA
GTCCCCAGGGCTGCCGAATCCAGCAGCGATGGAAAACGGCACCGGGCCCTACGGAGAAGAACGCCCACGTGAAGTCCAGG
AGACGACAGTCACCGAGGGGGCTGCCAAAATCGCCTTTCCCAGCGCCAACGAGGTCTTTTATAACCCGGTGCAGGAATTC
AATCGGGACCTGACATGTGCTGTGATCACCGAGTTTGCTCGCATTCAGCTTGGGGCCAAAGGAATCCAGATCAAGGTGCC
AGGAGAGAAGGACACTCAAAAAGTGGTCGTGGACTTGTCAGAGCAAGAGGAGGAAAAGGTTGAACTGAAAGAGAGTGAAA
ACCTGGCCTCAGGAGACCAACCTCGCACAGCGGCCGTGGGGGAGATCTGTGAGGAAGGCCTGCATGTGCTGGAAGGCCTG
GCAGCTTCGGGCCTACGTTCCATTCGATTTGCCCTAGAGGTGCCTGGGCTCAGATCTGTGGTTGCAAACGATGCCTCTGC
CCGGGCTGTGGATCTCATACGCCAGAATGTCCAGCTCAATGACGTGGCCCACCTGGTACAGCCGAGCCAAGCAGATGCCC
GGATGCTGATGTACCAGCACCAGAGGGTGTCGGAGAGGTTTGACGTCATCGATCTGGACCCCTATGGCAGCCCAGCCACC
TTCCTGGATGCAGCTGTGCAGGCTGTGAGTGAAGGAGGGTTGCTGTGTGTGACCTGCACGGACATGGCGGTGTTGGCGGG
GAACAGCGGGGAGACATGCTACAGCAAGTACGGGGCCATGGCCCTCAAGAGCCGGGCCTGCCACGAGATGGCCCTGAGAA
TCGTCCTGCACAGCCTGGACCTCCGCGCCAACTGCTACCAGCGCTTCGTGGTGCCGCTGCTCAGCATCAGCGCTGACTTC
TACGTGCGTGTTTTTGTCCGTGTCTTCACCGGCCAGGCCAAGGTCAAGGCCTCAGCCAGCAAGCAGGCGCTGGTGTTCCA
GTGTGTGGGCTGCGGGGCCTTCCACCTTCAGCGCCTCGGCAAAGCGTCAGGAGTCCCCAGCGGCCGGGTCAAGTTCTCTG
CAGCCTGTGGTCCCCCCGTGACCCCCGAGTGTGAACACTGTGGGCAGCGACACCAGCTTGGTGGACCCGTGTGGGCAGAG
CCCATCCATGACCTGGATTTTGTGGGCCGTGTCTTGGAGGCTGTGAGCGCTAACCCCGGCCGCTTCCACACCTCGGAGCG
GATCCGAGGGGTCCTGAGCGTCATCACTGAGGAGCTCCCGGACGTGCCTCTGTACTACACCCTGGACCAGCTGAGCAGCA
CCATCCACTGCAACACGCCAAGCCTCCTGCAGTTGCGGTCGGCCCTCCTCCACGCTGACTTCCGGGTCTCACTCTCCCAC
GCCTGTAAGAACGCTGTGAAGACGGATGCCCCTGCCTCCGCCCTCTGGGACATCATGCGTTGCTGGGAGAAGGAATGTCC
GGTGAAACGGGAGAGACTATCAGAGACTAGCCCAGCATTCCGCATTCTCAGTGTGGATCCCAGGCTACAGGCCAACTTCA
CCATCCGGGAAGATGCCAACCCCAGCTCCCGACAGCGAGGACTCAAGCGCTTCCAGGCTAACCCGGAGGCCAACTGGGGT
CCCCGGCCTCGTGCCCGGCCAGGGGGCAAGGCGGCCGACGAAGCTATGGAGGGAAGACGCAGGCTGCTTCAGAACAAGCG
GAAGGAGCCGCCGGAAGATGTGGCCCAGCGGGCTGCCCGGCTCAAGACATTTCCTTGCAAGAGGTTTAAGGAGGGCACCT
GTCAACGCGGGGACCAGTGCTGCTACTCCCACAGCCCCCCAACACCCGGGGTTTCTGCTGATGCTGCCCCTGACTGTCCA
GAGACCTCCAACCAGAGCCCCCCTGGACCTGGGGCTGCCGCTGGGCCAGGCATAGACTGA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP007412_brain_prefrontal_cortex | 22 .67 RPM |
| SRP007412_cerebellum | 12 .28 RPM |
| SRP007412_heart | 4 .49 RPM |
| SRP007412_kidney | 20 .42 RPM |
| SRP007412_liver | 12 .30 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Homo sapiens | ENSG00000104907 | ortholog_one2one | 1 retrogene | |
| Oryctolagus cuniculus | ENSOCUG00000021934 | ortholog_one2one | 1 retrogene | |
| Pan troglodytes | ENSPTRG00000010557 | ortholog_one2one | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_pabe_3709 | 86.55 | 82.85 | Please wait, loading  |
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Download FASTA sequences of all ENSPPYG00000009622 retrocopies