Parental gene: | GPCPD1, ENSPPYG00000010687 |
| Aliases: | None |
| Description: | glycerophosphocholine phosphodiesterase GDE1 homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:26957] |
| Organism: | Orangutan (Pongo abelii) |
| Coordinates: | 20:19043..80530(-) |
>ENSPPYG00000010687
ATGACACCTTCTCAGGTTGCCTTTGAAATAAGAGGATCTCTTTTACCAGGAGAAGTTTTTGCAATATGTGGAAGCTGTGA
TGCTTTGGGAAACTGGAATCCTCAAAATGCTGTGGCTCTTCTTCCAGAGAATGACACAGGTGAAAGCATGTTATGGAAAG
CAACCATTGTACTCAGTAGAGGAGTATCAGTTCAGTATCGCTACTTCAAAGGGTACTTTTTAGAACCAAAGACTTTCGGT
GGTCCATGTCAAGTGATAGTTCACAAGTGGGAGACTCATCTACAACCACGATCAATAACCCCTTTAGAAAGTGAAATTAT
TATTGACGATGGACAATTTGGAATCCACAATGGTGTTGAAACTCTGGATTCTGGATGGCTGACATGTCAGACTGAAATAA
GATTACGTTTGCATTATTCTGAAAAACCTCCTGTGTCAATAACCAAGAAAAAATTAAAAAAATCTAGATTTAGGGTGAAG
CTGACACTAGAAGGCCTGGAGGAAGATGACGATGATAGGGTATCTCCCACTGTACTCCACAAAATGTCCAATAGCTTGGA
GATATCCTTAATAAGCGACAATGAGTTCAAGTGCAGGCATTCACAGCCGGAGTGTGGTTATGGCTTGCAGCCTGATCGTT
GGACAGAGTACAGCATACAGACGATGGAGCCAGATAACCTGGAACTAATCTTTGATTTTTTTGAAGAAGATCTCAGTGAG
CACGTAGTTCAGGGTGATGCCCTTCCTGGACACGTGGGTACAGCTTGTCTCTTATCATCCACCATTGCTGAGAGTGGAAA
GAGTGCTGGAATTCTTACTCTTCCCATCATGAGCAGAAATTCCAGGAAAACAATAGGCAAAGTGAGAGTTGACTATATAA
TTATTAAGCCCTTACCAGGATACAGTTGTGGCATGAAATCTTCATTTTCCAAGTATTGGAAGCCAAGAATACCATTGGAT
GTTGGCCATCGAGGTGCAGGAAACTCTACAACAACTGCCCAGCTGGCTAAAGTTCAAGAAAATACTATTGCTTCTTTAAG
AAATGCTGCTAGTCATGGTGCAGCCTTTGTAGAATTTGATGTACACCTTTCAAAGGACTTTGTGCCTGTGGTATATCATG
ATCTTACCTGTTGTTTGACTATGAAAAAGAAATTTGATGCTGATCCAGTTGAATTATTTGAAATTCCAGTAAAAGAATTA
ACATTTGACCAACTCCAGTTGTTAAAGCTCACTCATGTGACTGCACTGAAATCTAAGGATCGGAAAGAATCTGTGGTCCA
GGAGGAAAATTCCTTTTCAGAAAATCAGCCATTTCCTTCTCTTAAGATGGTTTTAGAGTCTTTGCCAGAAGATGTAGGGT
TTAACATTGAAATAAAATGGATCTGCCAACAAAGGGATGGAATGTGGGATGGTAACTTATCAACATATTTTGACATGAAT
CTGTTTTTGGATATAATTTTAAAAACTGTTTTAGAAAATTCTGGGAAGAGGAGAATAGTGTTTTCTTCATTTGATGCAGA
TATTTGCACAATGGTTCGGCAAAAGCAGAACAAATATCCCATACTATTTTTAACTCAAGGAAAATCTGAGATTTATCCCG
AACTCATGGACCTCAGATCTCGGACAACCCCCATTGCAATGAGCTTTGCACAGTTTGAAAATCTACTGGGGATAAATGTA
CATACTGAAGACTTGCTCAGAAACCCATCCTATATTCAAGAGGCAAAAGCTAAGGGACTAGTCATATTCTGCTGGGGTGA
TGATACCAATGATCCTGAAAACAGAAGGAAATTGAAGGAACTTGGAGTTAATGGTCTAATTTACGATAGGATATATGATT
GGATGCCTGAACAACCAAATATATTCCAAGTGGAGCAATTGGAACGCCTGAAGCAAGAATTGCCAGAGCTTAAGAGCTGT
TTGTGTCCCACTGTTAGCCGCTTTGTTCCCTCATCTTTGTGTGGGGAGTCTGATATCCATGTGGATGCCAACGGCATTGA
TAACGTGGAGAATGCTTAG
ATGACACCTTCTCAGGTTGCCTTTGAAATAAGAGGATCTCTTTTACCAGGAGAAGTTTTTGCAATATGTGGAAGCTGTGA
TGCTTTGGGAAACTGGAATCCTCAAAATGCTGTGGCTCTTCTTCCAGAGAATGACACAGGTGAAAGCATGTTATGGAAAG
CAACCATTGTACTCAGTAGAGGAGTATCAGTTCAGTATCGCTACTTCAAAGGGTACTTTTTAGAACCAAAGACTTTCGGT
GGTCCATGTCAAGTGATAGTTCACAAGTGGGAGACTCATCTACAACCACGATCAATAACCCCTTTAGAAAGTGAAATTAT
TATTGACGATGGACAATTTGGAATCCACAATGGTGTTGAAACTCTGGATTCTGGATGGCTGACATGTCAGACTGAAATAA
GATTACGTTTGCATTATTCTGAAAAACCTCCTGTGTCAATAACCAAGAAAAAATTAAAAAAATCTAGATTTAGGGTGAAG
CTGACACTAGAAGGCCTGGAGGAAGATGACGATGATAGGGTATCTCCCACTGTACTCCACAAAATGTCCAATAGCTTGGA
GATATCCTTAATAAGCGACAATGAGTTCAAGTGCAGGCATTCACAGCCGGAGTGTGGTTATGGCTTGCAGCCTGATCGTT
GGACAGAGTACAGCATACAGACGATGGAGCCAGATAACCTGGAACTAATCTTTGATTTTTTTGAAGAAGATCTCAGTGAG
CACGTAGTTCAGGGTGATGCCCTTCCTGGACACGTGGGTACAGCTTGTCTCTTATCATCCACCATTGCTGAGAGTGGAAA
GAGTGCTGGAATTCTTACTCTTCCCATCATGAGCAGAAATTCCAGGAAAACAATAGGCAAAGTGAGAGTTGACTATATAA
TTATTAAGCCCTTACCAGGATACAGTTGTGGCATGAAATCTTCATTTTCCAAGTATTGGAAGCCAAGAATACCATTGGAT
GTTGGCCATCGAGGTGCAGGAAACTCTACAACAACTGCCCAGCTGGCTAAAGTTCAAGAAAATACTATTGCTTCTTTAAG
AAATGCTGCTAGTCATGGTGCAGCCTTTGTAGAATTTGATGTACACCTTTCAAAGGACTTTGTGCCTGTGGTATATCATG
ATCTTACCTGTTGTTTGACTATGAAAAAGAAATTTGATGCTGATCCAGTTGAATTATTTGAAATTCCAGTAAAAGAATTA
ACATTTGACCAACTCCAGTTGTTAAAGCTCACTCATGTGACTGCACTGAAATCTAAGGATCGGAAAGAATCTGTGGTCCA
GGAGGAAAATTCCTTTTCAGAAAATCAGCCATTTCCTTCTCTTAAGATGGTTTTAGAGTCTTTGCCAGAAGATGTAGGGT
TTAACATTGAAATAAAATGGATCTGCCAACAAAGGGATGGAATGTGGGATGGTAACTTATCAACATATTTTGACATGAAT
CTGTTTTTGGATATAATTTTAAAAACTGTTTTAGAAAATTCTGGGAAGAGGAGAATAGTGTTTTCTTCATTTGATGCAGA
TATTTGCACAATGGTTCGGCAAAAGCAGAACAAATATCCCATACTATTTTTAACTCAAGGAAAATCTGAGATTTATCCCG
AACTCATGGACCTCAGATCTCGGACAACCCCCATTGCAATGAGCTTTGCACAGTTTGAAAATCTACTGGGGATAAATGTA
CATACTGAAGACTTGCTCAGAAACCCATCCTATATTCAAGAGGCAAAAGCTAAGGGACTAGTCATATTCTGCTGGGGTGA
TGATACCAATGATCCTGAAAACAGAAGGAAATTGAAGGAACTTGGAGTTAATGGTCTAATTTACGATAGGATATATGATT
GGATGCCTGAACAACCAAATATATTCCAAGTGGAGCAATTGGAACGCCTGAAGCAAGAATTGCCAGAGCTTAAGAGCTGT
TTGTGTCCCACTGTTAGCCGCTTTGTTCCCTCATCTTTGTGTGGGGAGTCTGATATCCATGTGGATGCCAACGGCATTGA
TAACGTGGAGAATGCTTAG
| Library | Parental gene expression (RPM) |
|---|---|
| SRP007412_brain_prefrontal_cortex | 70 .61 RPM |
| SRP007412_cerebellum | 103 .60 RPM |
| SRP007412_heart | 46 .57 RPM |
| SRP007412_kidney | 45 .94 RPM |
| SRP007412_liver | 43 .09 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Homo sapiens | ENSG00000125772 | ortholog_one2one | 1 retrogene | |
| Pan troglodytes | ENSPTRG00000013228 | ortholog_one2one | 1 retrogene | |
| Ictidomys tridecemlineatus | ENSSTOG00000006827 | ortholog_one2one | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_pabe_3052 | 89.41 | 63.24 | Please wait, loading  | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSPPYG00000010687 retrocopies