Parental gene: | CCT5, ENSPPYG00000015342 |
| Aliases: | None |
| Description: | chaperonin containing TCP1, subunit 5 (epsilon) [Source:HGNC Symbol;Acc:1618] |
| Organism: | Orangutan (Pongo abelii) |
| Coordinates: | 5:10908083..10923648(+) |
>ENSPPYG00000015342
ATGGCGTCCATGGGGACCCTCGCCTTCGATGAATATGGGCGCCCTTTCCTCATCATCAAGGATCAGGACCGCAAGTCCCG
TCTTATGGGACTTGAGGCCCTCAAGTCTCATATTATGGCAGCAAAGGCTGTAGCAAATACAATGAGAACATCACTGGGAC
CAAATGGGCTTGATAAGATGATGGTGGATAAGGATGGAGATGTGACTGTAACTAATGATGGGGCCACCATCTTAAGCATG
ATGGATGTTGATCATCAGATTGCCAAGCTGATGGTGGAACTGTCCAAGTCTCAGGATGATGAAATTGGAGATGGAACCAC
AGGAGTGGTTGTCCTGGCTGGTGCCTTGTTAGAAGAAGCGGAGCAATTGCTAGACCGAGGCATTCACCCAATCAGAATAG
CTGATGGCTATGAGCAGGCTGCTCGCGTTGCTATTGAACACCTGGACAAGATCAGCGATAGCGTCCTTGTTGACATAAAG
GACACCGAACCCCTGATTCAGACAGCAAAAACCACGCTGGGCTCCAAAGTGGTCAACAGTTGTCACCGACAGATGGCTGA
GATTGCTGTGAATGCCGTCCTCACTGTAGCAGATATGGAGCGGAGAGACGTTGACTTTGAGCTTATCAAAGTAGAAGGCA
AAGTGGGCGGCAGGCTGGAGGACACTAAACTGATTAAGGGTGTGATTGTGGACAAGGATTTCAGTCACCCACAGATGCCA
AAAAAAGTGGAAGATGCTAAGATTGCAATTCTCACATGTCCGTTTGAACCACCCAAACCAAAAACAAAGCATAAGCTGGA
TGTGACCTCTGTCGAAGATTATAAAGCCCTTCAGAAATATGAAAAGGAGAAATTTGAAGAGATGATTCAACAAATTAAAG
AGACTGGTGCTAACCTAGCAATTTGTCAGTGGGGCTTTGATGATGAAGCAAATCACTTACTTCTTCAGAACAACTTGCCT
GCGGTTCGCTGGGTAGGAGGACCTGAAATTGAGCTGATTGCCATCGCAACAGGAGGGCGGATCGTCCCCAGATTCTCGGA
GCTCACAGCCGAGAAGCTGGGCTTTGCTGGTCTTGTACAGGAGATCTCATTTGGGACAACTAAGGATAAAATGCTGGTCT
TGGAGCAGTGTAAGAACTCCAGAGCTAGCTGTAACCATTTTATTAGAGGAAATAAGATGATCATTGAGGAGGCGAAACGA
TCCCTTCATGATGCTTTGTGTGTCATCCGGAACCTCATCCGCGATAATCGTGTGGTGTACGGAGGAGGGGCTGCTGAGAT
ATCCTGTGCCCTGGCAGTTAGCCAAGAGGCAGATAAGTGCCCCACCTTAGAACAGTATGCCATGAGAGCGTTTGCCGACG
CGCTGGAGGTCATCCCCATGGCCCTCTCTGAAAACAGTGGCATGAATCCCATCCAGACTATGACCGAAGTCCGAGCCAGA
CAGGTGAAGGAGATGAACCCTGCTCTTGGCATCGACTGTTTGCACAAGGGGACAAATGATATGAAGCAACAGCATGTCAT
AGAAACCTTGATTGGCAAAAAGCAACAGATATCTCTTGCAACACAAATGGTTAGAATGATTTTAAAGATTGACGACATTC
GTAAGCCTGGAGAATCTGAAGAATGA
ATGGCGTCCATGGGGACCCTCGCCTTCGATGAATATGGGCGCCCTTTCCTCATCATCAAGGATCAGGACCGCAAGTCCCG
TCTTATGGGACTTGAGGCCCTCAAGTCTCATATTATGGCAGCAAAGGCTGTAGCAAATACAATGAGAACATCACTGGGAC
CAAATGGGCTTGATAAGATGATGGTGGATAAGGATGGAGATGTGACTGTAACTAATGATGGGGCCACCATCTTAAGCATG
ATGGATGTTGATCATCAGATTGCCAAGCTGATGGTGGAACTGTCCAAGTCTCAGGATGATGAAATTGGAGATGGAACCAC
AGGAGTGGTTGTCCTGGCTGGTGCCTTGTTAGAAGAAGCGGAGCAATTGCTAGACCGAGGCATTCACCCAATCAGAATAG
CTGATGGCTATGAGCAGGCTGCTCGCGTTGCTATTGAACACCTGGACAAGATCAGCGATAGCGTCCTTGTTGACATAAAG
GACACCGAACCCCTGATTCAGACAGCAAAAACCACGCTGGGCTCCAAAGTGGTCAACAGTTGTCACCGACAGATGGCTGA
GATTGCTGTGAATGCCGTCCTCACTGTAGCAGATATGGAGCGGAGAGACGTTGACTTTGAGCTTATCAAAGTAGAAGGCA
AAGTGGGCGGCAGGCTGGAGGACACTAAACTGATTAAGGGTGTGATTGTGGACAAGGATTTCAGTCACCCACAGATGCCA
AAAAAAGTGGAAGATGCTAAGATTGCAATTCTCACATGTCCGTTTGAACCACCCAAACCAAAAACAAAGCATAAGCTGGA
TGTGACCTCTGTCGAAGATTATAAAGCCCTTCAGAAATATGAAAAGGAGAAATTTGAAGAGATGATTCAACAAATTAAAG
AGACTGGTGCTAACCTAGCAATTTGTCAGTGGGGCTTTGATGATGAAGCAAATCACTTACTTCTTCAGAACAACTTGCCT
GCGGTTCGCTGGGTAGGAGGACCTGAAATTGAGCTGATTGCCATCGCAACAGGAGGGCGGATCGTCCCCAGATTCTCGGA
GCTCACAGCCGAGAAGCTGGGCTTTGCTGGTCTTGTACAGGAGATCTCATTTGGGACAACTAAGGATAAAATGCTGGTCT
TGGAGCAGTGTAAGAACTCCAGAGCTAGCTGTAACCATTTTATTAGAGGAAATAAGATGATCATTGAGGAGGCGAAACGA
TCCCTTCATGATGCTTTGTGTGTCATCCGGAACCTCATCCGCGATAATCGTGTGGTGTACGGAGGAGGGGCTGCTGAGAT
ATCCTGTGCCCTGGCAGTTAGCCAAGAGGCAGATAAGTGCCCCACCTTAGAACAGTATGCCATGAGAGCGTTTGCCGACG
CGCTGGAGGTCATCCCCATGGCCCTCTCTGAAAACAGTGGCATGAATCCCATCCAGACTATGACCGAAGTCCGAGCCAGA
CAGGTGAAGGAGATGAACCCTGCTCTTGGCATCGACTGTTTGCACAAGGGGACAAATGATATGAAGCAACAGCATGTCAT
AGAAACCTTGATTGGCAAAAAGCAACAGATATCTCTTGCAACACAAATGGTTAGAATGATTTTAAAGATTGACGACATTC
GTAAGCCTGGAGAATCTGAAGAATGA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP007412_brain_prefrontal_cortex | 102 .90 RPM |
| SRP007412_cerebellum | 107 .37 RPM |
| SRP007412_heart | 63 .13 RPM |
| SRP007412_kidney | 97 .88 RPM |
| SRP007412_liver | 87 .89 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Monodelphis domestica | ENSMODG00000002356 | ortholog_one2one | 1 retrogene | |
| Tupaia belangeri | ENSTBEG00000001201 | ortholog_one2one | 2 retrogenes |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_pabe_1012 | 82.10 | 99.82 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_pabe_2678 | 83.83 | 85.95 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSPPYG00000015342 retrocopies