Parental gene: | HDHD1, ENSPPYG00000020105 |
| Aliases: | None |
| Description: | haloacid dehalogenase-like hydrolase domain containing 1 [Source:HGNC Symbol;Acc:16818] |
| Organism: | Orangutan (Pongo abelii) |
| Coordinates: | X:6727608..6826946(-) |
>ENSPPYG00000020105
ATGGCGGCGCCCCCGCCGCAGCCCGTCACCCACCTCATCTTTGACATGGACGGACTTCTTCTGGATACTGAACAGCTGTA
TTCAGTGGTGTTTCAAGAAATATGTGATCGCTATGACAAGAAATACAGCTGGGATGTAAAGTCCCTGGTTATGGGTAAGA
AGGCATTAGAGGCGGCACAGATTATAATAGACGTCTTGCAGCTCCCAATGTCCAAAGAGGAGCTGGTGGAAGAAAGCCAA
ACAAAGTTAAAGGAAGTGTTCCCCACGGCTGCGCTCATGCCAGGGGCTGAGAAACTCATCATCCACCTGCGGAAACACGG
CATCCCCTTTGCGCTGGCCACCAGCTCGGGGTCCGCATCGTTCGAGATGAAGACGAGCCACCACCAGGAGTTCTTCAGCT
TGTTTTCCCACATTGTGCTGGGAGATGACCCCGAAGTGCAGCATGGCAAGCCAGACCCAGACATCTTCCTAGCTTGTGCC
AAGAGGTTCTCTCCCCCTCCTGCTATGGAAAAGTGCCTTGTCTTTGAAGATGCTCCCAACGGGGTAGAGGCGGCCCTGGC
AGCTGGGATGCAGGTGGTCATGGTTCCTGACGGAAACTTGAGCCGAGATCTGACGACGAAGGCCACCCTGGTGCTGAATT
CCCTGCAGGACTTCCAGCCCGAGCTGTTTGGTTTGCCCCCCTATGAGTGA
ATGGCGGCGCCCCCGCCGCAGCCCGTCACCCACCTCATCTTTGACATGGACGGACTTCTTCTGGATACTGAACAGCTGTA
TTCAGTGGTGTTTCAAGAAATATGTGATCGCTATGACAAGAAATACAGCTGGGATGTAAAGTCCCTGGTTATGGGTAAGA
AGGCATTAGAGGCGGCACAGATTATAATAGACGTCTTGCAGCTCCCAATGTCCAAAGAGGAGCTGGTGGAAGAAAGCCAA
ACAAAGTTAAAGGAAGTGTTCCCCACGGCTGCGCTCATGCCAGGGGCTGAGAAACTCATCATCCACCTGCGGAAACACGG
CATCCCCTTTGCGCTGGCCACCAGCTCGGGGTCCGCATCGTTCGAGATGAAGACGAGCCACCACCAGGAGTTCTTCAGCT
TGTTTTCCCACATTGTGCTGGGAGATGACCCCGAAGTGCAGCATGGCAAGCCAGACCCAGACATCTTCCTAGCTTGTGCC
AAGAGGTTCTCTCCCCCTCCTGCTATGGAAAAGTGCCTTGTCTTTGAAGATGCTCCCAACGGGGTAGAGGCGGCCCTGGC
AGCTGGGATGCAGGTGGTCATGGTTCCTGACGGAAACTTGAGCCGAGATCTGACGACGAAGGCCACCCTGGTGCTGAATT
CCCTGCAGGACTTCCAGCCCGAGCTGTTTGGTTTGCCCCCCTATGAGTGA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP007412_brain_prefrontal_cortex | 14 .21 RPM |
| SRP007412_cerebellum | 8 .15 RPM |
| SRP007412_heart | 2 .50 RPM |
| SRP007412_kidney | 15 .58 RPM |
| SRP007412_liver | 14 .96 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Anolis carolinensis | ENSACAG00000004616 | ortholog_one2one | 1 retrogene | |
| Choloepus hoffmanni | ENSCHOG00000001318 | ortholog_one2one | 5 retrogenes | |
| Homo sapiens | ENSG00000130021 | ortholog_one2one | 2 retrogenes | |
| Gorilla gorilla | ENSGGOG00000004425 | ortholog_one2one | 1 retrogene | |
| Microcebus murinus | ENSMICG00000017082 | ortholog_one2one | 1 retrogene | |
| Macaca mulatta | ENSMMUG00000017377 | ortholog_one2many | 1 retrogene | |
| Monodelphis domestica | ENSMODG00000017505 | ortholog_one2many | 2 retrogenes | |
| Pteropus vampyrus | ENSPVAG00000011149 | ortholog_one2one | 1 retrogene | |
| Tarsius syrichta | ENSTSYG00000013238 | ortholog_one2one | 4 retrogenes |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_pabe_280 | 79.53 | 74.67 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_pabe_1837 | 73.18 | 76.42 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSPPYG00000020105 retrocopies