Parental gene:

HDHD1, ENSPPYG00000020105

Aliases:None
Description:haloacid dehalogenase-like hydrolase domain containing 1 [Source:HGNC Symbol;Acc:16818]
Organism:Orangutan (Pongo abelii)
Coordinates:X:6727608..6826946(-)


>ENSPPYG00000020105
ATGGCGGCGCCCCCGCCGCAGCCCGTCACCCACCTCATCTTTGACATGGACGGACTTCTTCTGGATACTGAACAGCTGTA
TTCAGTGGTGTTTCAAGAAATATGTGATCGCTATGACAAGAAATACAGCTGGGATGTAAAGTCCCTGGTTATGGGTAAGA
AGGCATTAGAGGCGGCACAGATTATAATAGACGTCTTGCAGCTCCCAATGTCCAAAGAGGAGCTGGTGGAAGAAAGCCAA
ACAAAGTTAAAGGAAGTGTTCCCCACGGCTGCGCTCATGCCAGGGGCTGAGAAACTCATCATCCACCTGCGGAAACACGG
CATCCCCTTTGCGCTGGCCACCAGCTCGGGGTCCGCATCGTTCGAGATGAAGACGAGCCACCACCAGGAGTTCTTCAGCT
TGTTTTCCCACATTGTGCTGGGAGATGACCCCGAAGTGCAGCATGGCAAGCCAGACCCAGACATCTTCCTAGCTTGTGCC
AAGAGGTTCTCTCCCCCTCCTGCTATGGAAAAGTGCCTTGTCTTTGAAGATGCTCCCAACGGGGTAGAGGCGGCCCTGGC
AGCTGGGATGCAGGTGGTCATGGTTCCTGACGGAAACTTGAGCCGAGATCTGACGACGAAGGCCACCCTGGTGCTGAATT
CCCTGCAGGACTTCCAGCCCGAGCTGTTTGGTTTGCCCCCCTATGAGTGA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 14 .21 RPM
SRP007412_cerebellum 8 .15 RPM
SRP007412_heart 2 .50 RPM
SRP007412_kidney 15 .58 RPM
SRP007412_liver 14 .96 RPM



Species Parental gene accession Homology type Retrogenes number
Anolis carolinensis ENSACAG00000004616 ortholog_one2one 1 retrogene
retro_acar_48,
Choloepus hoffmanni ENSCHOG00000001318 ortholog_one2one 5 retrogenes
retro_chof_1597, retro_chof_1855, retro_chof_1883, retro_chof_2136, retro_chof_2168,
Homo sapiens ENSG00000130021 ortholog_one2one 2 retrogenes
retro_hsap_2469, retro_hsap_454,
Gorilla gorilla ENSGGOG00000004425 ortholog_one2one 1 retrogene
retro_ggor_1537,
Microcebus murinus ENSMICG00000017082 ortholog_one2one 1 retrogene
retro_mmur_1321,
Macaca mulatta ENSMMUG00000017377 ortholog_one2many 1 retrogene
retro_mmul_244,
Monodelphis domestica ENSMODG00000017505 ortholog_one2many 2 retrogenes
retro_mdom_1374, retro_mdom_52,
Pteropus vampyrus ENSPVAG00000011149 ortholog_one2one 1 retrogene
retro_pvam_1165,
Tarsius syrichta ENSTSYG00000013238 ortholog_one2one 4 retrogenes
retro_tsyr_2013, retro_tsyr_345, retro_tsyr_542, retro_tsyr_931,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_pabe_280 79.53 74.67
Please wait, loading
Please wait, loading
Please wait, loading
2. retro_pabe_1837 73.18 76.42
Please wait, loading
Please wait, loading
Please wait, loading
Download FASTA sequences of all ENSPPYG00000020105 retrocopies