RetrogeneDB ID: | retro_pabe_280 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | 1:99427055..99427568(+) | ||
Located in intron of: | ENSPPYG00000000847 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | HDHD1 | ||
Ensembl ID: | ENSPPYG00000020105 | ||
Aliases: | None | ||
Description: | haloacid dehalogenase-like hydrolase domain containing 1 [Source:HGNC Symbol;Acc:16818] |
Percent Identity: | 79.53 % |
Parental protein coverage: | 74.67 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 0 |
Parental | PPPQPVTHLIFDMDGLLLDTEQLYSVVFQEICDRYDKKYSWDVKSLVMGKKALEAAQIIIDVLQLPMSKE |
PP.QP..HLIFDMDGLLLDTE.LYS..FQEICD.Y.KKYSWDVKSLVMGK.ALEAAQII.D.LQL.MSKE | |
Retrocopy | PPLQPIIHLIFDMDGLLLDTEGLYSLLFQEICDCYEKKYSWDVKSLVMGK*ALEAAQIIRDILQLLMSKE |
Parental | ELVEESQTKLKEVFPTAALMPGAEKLIIHLRKHGIPFALATSSGSASFEMKTSHHQEFFSLFSHIVLGDD |
ELVE.SQTKLKEVFPTA.LMPG.E.LI..L.KH.IPFA.ATSSGSAS.EMK.S.H.EFF.LFSHI.LGDD | |
Retrocopy | ELVE*SQTKLKEVFPTAVLMPGTENLIVRLQKHSIPFAMATSSGSASLEMKVSQHKEFFRLFSHIMLGDD |
Parental | PEVQHGKPDPDIFLACAKRFSPPPAMEKCLV |
P.VQH.KPDP.I.LA.AKRFSP.P..EKCLV | |
Retrocopy | PKVQHSKPDPNIVLAYAKRFSPCPTTEKCLV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 14 .21 RPM |
SRP007412_cerebellum | 0 .00 RPM | 8 .15 RPM |
SRP007412_heart | 0 .00 RPM | 2 .50 RPM |
SRP007412_kidney | 0 .00 RPM | 15 .58 RPM |
SRP007412_liver | 0 .00 RPM | 14 .96 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_454 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Anolis carolinensis | ENSACAG00000004616 | 1 retrocopy | |
Choloepus hoffmanni | ENSCHOG00000001318 | 5 retrocopies | |
Homo sapiens | ENSG00000130021 | 2 retrocopies | |
Gorilla gorilla | ENSGGOG00000004425 | 1 retrocopy | |
Microcebus murinus | ENSMICG00000017082 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000017377 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000017505 | 2 retrocopies | |
Pongo abelii | ENSPPYG00000020105 | 2 retrocopies |
retro_pabe_1837, retro_pabe_280 ,
|
Pteropus vampyrus | ENSPVAG00000011149 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000013238 | 4 retrocopies |