Parental gene:

IPMK, ENSPTRG00000002516

Aliases:None
Description:None
Organism:Chimpanzee (Pan troglodytes)
Coordinates:10:56526416..56607073(-)


>ENSPTRG00000002516
ATGGCAACAGAGCCACCATCCCCCCTCCGGGTCGAGGCGCCGGGCCCCCCAGAAATGCGGACCTCACCGGCGATCGAGTC
CACCCCTGAGGGCACCCCGCAGCCGGCGGGCGGCAGACTCCGCTTCCTCAACGGCTGCGTGCCCCTCTCGCATCAGGTGG
CCGGGCACATGTACGGGAAGGACAAAGTGGGTATACTGCAACATCCAGATGGCACAGTTTTGAAACAGTTACAACCACCT
CCAAGGGGCCCAAGAGAGCTGGAATTCTATAATATGGTTTATGCTGCTGACTGTTTTGATGGTGTTCTTCTAGAGCTACG
AAAATATTTGCCAAAATATTATGGCATCTGGTCACCTCCCACTGCACCAAATGATTTATACCTAAAACTGGAAGATGTGA
CCCATAAATTTAATAAGCCCTGTATAATGGATGTAAAGATAGGGCAAAAAAGCTATGATCCTTTTGCCTCATCTGAGAAG
ATTCAGCAACAGGTCAGCAAGTACCCATTAATGGAAGAGATTGGGTTCTTGGTGCTTGGCATGAGGGTTTATCATGTTCA
TTCCGATAGCTATGAGACACAAAACCAGCATTACGGAAGAAGCTTAACAAAAGAAACTATAAAGGATGGAGTCTCCAGAT
TTTTTCATAATGGGTACTGCTTAAGAAAAGATGCTGTTGCTGCCAGTATTCAGAAGATTGAGAAAATTCTGCAGTGGTTT
GAAAACCAGAAGCAGCTTAATTTTTACGCAAGTTCATTACTCTTTGTTTATGAAGGTTCATCTCAGCCAACCACTACAAA
ATTGAATGACAGAACTTTGGCAGAAAAGTTTTTGTCCAAAGGACAACTGTCAGACACAGAAGTACTAGAGTACAATAATA
ACTTTCATGTGTTAAGTTCCACAGCTAATGGAAAAATAGAGTCTTCAGTGGGCAAAAGCTTGTCCAAGATATATGCACGT
CACAGGAAAATATATACAAAAAAGCATCACAGTCAGACTTCGTTGAAAGTTGAAAATCTGGAGCAAGACAATGGGTGGAA
AAGCATGTCACAGGAACATTTAAATGGAAATGTACTTTCCCAACTGGAAAAAGTTTTCTACCATCTTCCCACTGGTTGCC
AAGAGATTGCTGAAGTAGAAGTGCGAATGATAGATTTTGCTCATGTGTTCCCTAGCAACACAATAGATGAGGGATATGTT
TATGGGCTAAAGCATTTAATTTCTGTACTTCGAAGTATTTTAGACAATTGA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 5 .70 RPM
SRP007412_cerebellum 5 .81 RPM
SRP007412_heart 2 .86 RPM
SRP007412_kidney 5 .73 RPM
SRP007412_liver 4 .06 RPM
SRP007412_testis 5 .27 RPM



Species Parental gene accession Homology type Retrogenes number
Anas platyrhynchos ENSAPLG00000011011 ortholog_one2one 1 retrogene
retro_apla_14,
Cavia porcellus ENSCPOG00000000222 ortholog_one2one 1 retrogene
retro_cpor_369,
Erinaceus europaeus ENSEEUG00000009958 ortholog_one2one 1 retrogene
retro_eeur_110,
Homo sapiens ENSG00000151151 ortholog_one2one 2 retrogenes
retro_hsap_1244, retro_hsap_2032,
Gorilla gorilla ENSGGOG00000008790 ortholog_one2one 1 retrogene
retro_ggor_1464,
Myotis lucifugus ENSMLUG00000015030 ortholog_one2one 1 retrogene
retro_mluc_518,
Nomascus leucogenys ENSNLEG00000012319 ortholog_one2one 2 retrogenes
retro_nleu_2419, retro_nleu_2622,
Pongo abelii ENSPPYG00000002433 ortholog_one2one 3 retrogenes
retro_pabe_1035, retro_pabe_1086, retro_pabe_1689,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ptro_855 91.05 61.06
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2. retro_ptro_1351 88.04 100.00
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Download FASTA sequences of all ENSPTRG00000002516 retrocopies