RetrogeneDB ID: retro_mluc_518

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429767:35834694..35835613(+)
• Located in intron of: ENSMLUG00000011014

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: IPMK
• Ensembl ID: ENSMLUG00000015030
• Aliases: None
• Description: None

Sequence

>retro_mluc_518
TTAGAGCTTTAAAAATTTCTGCCAAAATATTATGGCATCTGGTGACCTCCCACTGTGCCAAATGATTTATACCTAAACCT
TGAAGATGTGACCCATAGATTTAATAAGCCCTGTCTAATGGATGTAAAGATAGGGCAAAGAGCTATGATTCTTTTGCGTT
ACCTGAGAAGATTCAGCAACAGGTAGGCAAGTGTTCAGAGATTGGGTTCTTGGTGTGTGGCATGAGAGTTTATCATGTTC
ATTCTCATAGCTAGAAGACACAAAACCAGCACTATGGAAGAAGCCTAACGAAAGAAACTAAAGGATGGAGTTTCCAGATT
TTTTTGGTAATGGATTCTGCTTAGAAAAATATGCTGTTGCTGCCAGTATTCAGAAGATTGAGAGTACTCTGCAGTGGTTT
GAAAGCCAGGAGCAGCTTAACTTTTATGTGAGTTCATTACTGTTTGTTTATGAAGGTTCATCTGAGCCAACTACTACAAA
ATCAAATGACAGAACTTTGGCAGAAATGTTTTTGTCCAAAGGACAACTCTCAAACACAGACATACTGAAGTACAATAATA
ACTTTCAAGTGTTAAGTTCCACAATGAATGGAAAAATAGTAGACAAAACCTTATCCAAGATATATGGTCATCACAGAAAA
ATGTATTTGAAAAAACATCACAGTCAGACTTCATTGAAAGTTGAAAATATATGGCAAGACAATAGGTGGAGAAGTTTGTC
ACAGGAACATTTAAACAGAAATATACTTTCCCAACTGGAAAAGACTTTCTACCATCTTCCCACTGGTTGCCAAAAGATTG
CAGAAATAGAAGTGGGAATGATAGATTTTTCTCATGTTTTCCCTAGCAACACAATAGATGAGGGATATGTCTAAGGACTG
AAGCAAATAATTACTGTACTACAGAGTATTTTAGACAAT

Alignment

ORF - retro_mluc_518 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 78.73 %
• Parental protein coverage: 75.24 %
• Number of stop codons detected: 4
• Number of frameshifts detected: 2

Retrocopy - Parental Gene Alignment:

Parental  LELRKYLPKYYGIWSPPTAPNDLYLKLEDVTHKFNKPCIMDVKIGR-KSYDPFASSEKIQQQVSKYPLME
          LEL.K.LPKYYGIW.PPT.PNDLYL.LEDVTH.FNKPC.MDVKIG..KSYD.FA..EKIQQQV.K.....
Retrocopy LEL*KFLPKYYGIW*PPTVPNDLYLNLEDVTHRFNKPCLMDVKIGQ<KSYDSFALPEKIQQQVGK---CS

Parental  EIGFLVLGMRVYHVHSDSYETQNQHYGRSLTKETLKEGVSRF-FHNGFCLRKDAVAASIQKIERILQWFE
          EIGFLV.GMRVYHVHS.S..TQNQHYGRSLTKET.......F.F.NGFCL.K.AVAASIQKIE..LQWFE
Retrocopy EIGFLVCGMRVYHVHSHS*KTQNQHYGRSLTKETKGWSFQIF<FGNGFCLEKYAVAASIQKIESTLQWFE

Parental  SQKQLNFYASSLLFVYEGSSHPTTTKSNDRTLAEKFLSKGQLSDTDILEYNNNFRVLSSATNGKIEASVG
          SQ.QLNFY.SSLLFVYEGSS.PTTTKSNDRTLAE.FLSKGQLS.TDIL.YNNNF.VLSS..NGKI...V.
Retrocopy SQEQLNFYVSSLLFVYEGSSEPTTTKSNDRTLAEMFLSKGQLSNTDILKYNNNFQVLSSTMNGKI---VD

Parental  KSLSKMYARHRKMYSRKHHSQTSLKVENIEQDNGWKSLSQEHLNGNVLSQLEKVFYHLPTGCQEIAEVEV
          K.LSK.Y..HRKMY..KHHSQTSLKVENI.QDN.W.SLSQEHLN.N.LSQLEK.FYHLPTGCQ.IAE.EV
Retrocopy KTLSKIYGHHRKMYLKKHHSQTSLKVENIWQDNRWRSLSQEHLNRNILSQLEKTFYHLPTGCQKIAEIEV

Parental  RMIDFAHVFPSNTIDEGYVYGLKNLITVLQSILDN
          .MIDF.HVFPSNTIDEGYV.GLK..ITVLQSILDN
Retrocopy GMIDFSHVFPSNTIDEGYV*GLKQIITVLQSILDN

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_518 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 9 parental genes, and 14 retrocopies.

Species	Parental gene accession	Retrocopies number
Anas platyrhynchos	ENSAPLG00000011011	1 retrocopy	retro_apla_14,
Cavia porcellus	ENSCPOG00000000222	1 retrocopy	retro_cpor_369,
Erinaceus europaeus	ENSEEUG00000009958	1 retrocopy	retro_eeur_110,
Homo sapiens	ENSG00000151151	2 retrocopies	retro_hsap_1244, retro_hsap_2032,
Gorilla gorilla	ENSGGOG00000008790	1 retrocopy	retro_ggor_1464,
Myotis lucifugus	ENSMLUG00000015030	1 retrocopy	retro_mluc_518 ,
Nomascus leucogenys	ENSNLEG00000012319	2 retrocopies	retro_nleu_2419, retro_nleu_2622,
Pongo abelii	ENSPPYG00000002433	3 retrocopies	retro_pabe_1035, retro_pabe_1086, retro_pabe_1689,
Pan troglodytes	ENSPTRG00000002516	2 retrocopies	retro_ptro_1351, retro_ptro_855,