Parental gene:

SSB, ENSPTRG00000012620

Aliases:None
Description:None
Organism:Chimpanzee (Pan troglodytes)
Coordinates:2B:174211697..174224922(+)


>ENSPTRG00000012620
ATGGCTGAAAATGGTGATAATGAAAAGATGGCTGCCCTGGAGGCCAAAATCTGTCATCAAATTGAGTATTATTTTGGCGA
CTTCAATTTGCCACGGGACAAGTTTCTAAAGGAACAGATAAAACTGGATGAAGGCTGGGTACCTTTGGAGATAATGATAA
AATTCAACAGGTTGAACCGTCTAACAACAGACTTTAATGTAATTGTGGAAGCACTGAGCAAATCCAAGGCAGAACTCATG
GAAATCAGTGAAGATAAAACTAAAATCAGAAGGTCTCCAAGCAAACCCCTACCTGAAGTGACTGATGAGTATAAAAATGA
TGTAAAAAACAGATCTGTTTATATTAAAGGCTTCCCAACTGATGCAACTCTTGATGACATAAAAGAATGGTTAGAAGATA
AAGGTCAAGTACTAAATATTCAGATGAGAAGAACATTGCATAAAGCATTTAAGGGATCAATTTTTGTTGTGTTTGATAGC
ATTGAATCTGCTAAGAAATTTGTAGAGACCCCTGGCCAGAAGTACAAAGAAACAGACCTGCTAATACTTTTCAAGGACGA
TTACTTTGCCAAAAAAAATGAAGAAAGAAAACAAAATAAAGTGGAAGCTAAATTAAGAGCTAAACAGGAGCAAGAAGCAA
AACAAAAGTTAGAAGAAGATGCTGAAATGAAATCTCTAGAAGAAAAGATTGGATGCTTGCTGAAATTTTCGGGTGATTTA
GATGATCAGACCTGTAGAGAAGATTTACACATACTTTTCTCAAATCATGGTGAAATAAAATGGATAGACTTCGTCAGAGG
AGCAAAAGAGGGGATAATTCTATTTAAAGAAAAAGCCAAGGAAGCATTGGGTAAAGCCAAAGATGCAAATAATGGTAACC
TACAATTAAGGAACAAAGAAGTGACTTGGGAAGTACTAGAAGGAGAGGTGGAAAAAGAAGCACTGAAAAAAATAATAGAA
GACCAACAAGAATCCCTAAACAAATGGAAGTCAAAAGGTCGTAGATTTAAAGGAAAAGGAAAGGGTAATAAAGCTGCCCA
GCCTGGGTCTGGTAAAGGAAAAGTACAGTTTCAGGGCAAGAAAACGAAATTTGCTAGTGATGATGAACATGATGAACATG
ATGAAAATGGTGCAACTGGACCTGTGAAAAGAGCAAGAGAAGAAACAGACAAAGAAGAACCTGCATCCAAACAACAGAAA
ACAGAAAATGGTGCTGGAGACCAGTAG

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 36 .62 RPM
SRP007412_cerebellum 59 .01 RPM
SRP007412_heart 49 .87 RPM
SRP007412_kidney 45 .71 RPM
SRP007412_liver 39 .51 RPM
SRP007412_testis 64 .81 RPM



Species Parental gene accession Homology type Retrogenes number
Choloepus hoffmanni ENSCHOG00000007763 ortholog_one2one 5 retrogenes
retro_chof_1125, retro_chof_1292, retro_chof_1380, retro_chof_185, retro_chof_2593,
Dasypus novemcinctus ENSDNOG00000013450 ortholog_one2one 1 retrogene
retro_dnov_2038,
Echinops telfairi ENSETEG00000004614 ortholog_one2one 1 retrogene
retro_etel_2056,
Homo sapiens ENSG00000138385 ortholog_one2one 1 retrogene
retro_hsap_448,
Gorilla gorilla ENSGGOG00000023471 ortholog_one2one 4 retrogenes
retro_ggor_2834, retro_ggor_2915, retro_ggor_433, retro_ggor_792,
Loxodonta africana ENSLAFG00000000867 ortholog_one2many 3 retrogenes
retro_lafr_698, retro_lafr_745, retro_lafr_982,
Macropus eugenii ENSMEUG00000001650 ortholog_one2one 1 retrogene
retro_meug_1908,
Myotis lucifugus ENSMLUG00000016316 ortholog_one2one 1 retrogene
retro_mluc_2493,
Macaca mulatta ENSMMUG00000023051 ortholog_one2one 2 retrogenes
retro_mmul_1153, retro_mmul_529,
Monodelphis domestica ENSMODG00000008227 ortholog_one2many 1 retrogene
retro_mdom_1080,
Nomascus leucogenys ENSNLEG00000004958 ortholog_one2one 3 retrogenes
retro_nleu_1039, retro_nleu_177, retro_nleu_3011,
Otolemur garnettii ENSOGAG00000029768 ortholog_one2one 1 retrogene
retro_ogar_1642,
Pongo abelii ENSPPYG00000012919 ortholog_one2one 3 retrogenes
retro_pabe_3408, retro_pabe_3641, retro_pabe_424,
Rattus norvegicus ENSRNOG00000007998 ortholog_one2many 1 retrogene
retro_rnor_405,
Tupaia belangeri ENSTBEG00000009056 ortholog_one2one 4 retrogenes
retro_tbel_1065, retro_tbel_1269, retro_tbel_3318, retro_tbel_4012,
Tursiops truncatus ENSTTRG00000002152 ortholog_one2one 2 retrogenes
retro_ttru_1926, retro_ttru_466,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ptro_2509 85.24 50.98
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Download FASTA sequences of all ENSPTRG00000012620 retrocopies