Parental gene: | TNPO1, ENSPTRG00000016972 |
| Aliases: | None |
| Description: | None |
| Organism: | Chimpanzee (Pan troglodytes) |
| Coordinates: | 5:42693481..42791957(-) |
>ENSPTRG00000016972
ATGGTGTGGGACCGGCAAACCAAGATGGAGTATGAGTGGAAACCTGACGAGCAAGGGCTCCAGCAAATCCTGCAGTTGTT
GAAGGAGTCCCAGTCCCCAGACACCACCATCCAGAGAACCGTGCAACAAAAACTGGAACAACTTAATCAGTATCCAGACT
TTAACAACTACTTGATTTTTGTTCTTACAAAATTAAAATCTGAAGATGAACCCACAAGATCATTGAGTGGTCTTATCTTG
AAGAATAATGTGAAAGCACACTTTCAGAACTTCCCAAATGGTGTAACAGACTTTATTAAAAGTGAATGTTTAAATAATAT
TGGTGACTCCTCTCCTCTGATTAGAGCCACTGTTGGTATTTTGATCACAACTATAGCCTCCAAGGGAGAATTGCAGAATT
GGCCTGACCTCTTACCAAAACTCTGTAGCCTGTTGGATTCTGAAGATTATAATACCTGTGAGGGAGCATTTGGTGCCCTT
CAGAAGATTTGTGAAGATTCTGCTGAGATTTTAGACAGTGATGTTTTAGATCGTCCTCTCAACATCATGATTCCCAAATT
TTTACAGTTCTTCAAGCATAGTAGTCCAAAAATAAGGTCTCACGCTGTTGCATGTGTCAATCAGTTTATCATCAGTAGGA
CTCAAGCTCTAATGTTGCACATTGATTCTTTTATTGAGAATCTCTTTGCATTAGCTGGTGATGAAGAACCAGAGGTACGG
AAAAATGTGTGCCGAGCGCTTGTGATGTTGCTCGAAGTTCGAATGGATCGCCTGCTTCCTCACATGCATAATATAGTTGA
GTACATGCTACAGAGGACTCAAGATCAAGATGAAAATGTGGCTTTAGAAGCCTGTGAATTTTGGCTAACTTTAGCTGAAC
AGCCAATATGCAAAGATGTACTCGTAAGGCATCTTCCTAAGTTGATTCCTGTGTTAGTGAATGGCATGAAGTACTCAGAC
ATAGATATTATCCTACTTAAGGGTGATGTTGAAGAAGACGAAACGATTCCTGATAGTGAACAGGATATACGGCCACGTTT
TCACCGATCGAGGACGGTGGCTCAGCAGCATGATGAAGATGGAATTGAAGAGGAAGATGATGATGATGATGAAATTGATG
ATGATGATACAATTTCTGACTGGAATCTAAGAAAATGTTCTGCTGCTGCCCTGGATGTTCTTGCAAATGTGTATCGTGAT
GAACTGCTGCCACATATTTTGCCCCTTTTGAAAGAATTACTTTTTCATCATGAATGGGTTGTTAAAGAATCAGGCATTTT
GGTTTTAGGAGCAATTGCTGAAGGTTGCATGCAGGGCATGATTCCATACTTGCCTGAGCTTATTCCTCACCTTATTCAGT
GCCTCTCTGATAAAAAGGCTCTTGTGCGTTCCATAACATGCTGGACTCTTAGCCGCTATGCACACTGGGTGGTCAGCCAG
CCGCCAGACACGTACCTGAAGCCATTAATGACAGAATTGCTAAAGCGCATCCTGGATAGCAACAAGAGAGTACAAGAAGC
TGCCTGCAGTGCCTTTGCTACCCTAGAAGAGGAGGCTTGTACAGAACTTGTTCCTTACCTTGCTTATATACTTGATACCC
TGGTCTTTGCATTTAGTAAATACCAGCATAAGAACCTGCTCATTCTTTACGATGCCATAGGAACATTAGCAGATTCAGTA
GGACATCATTTAAACAAACCAGAATATATTCAGATGCTAATGCCTCCACTGATCCAGAAATGGAACATGTTAAAGGATGA
AGATAAAGATCTCTTCCCTTTACTTGAGTGCCTATCTTCAGTTGCCACAGCACTGCAGTCTGGCTTCCTTCCGTACTGTG
AACCTGTGTATCAGCGTTGTGTAAACCTAGTACAGAAGACTCTTGCACAAGCCATGCTAAACAATGCTCAACCAGATCAA
TATGAAGCTCCAGATAAAGATTTTATGATAGTGGCTCTTGATTTACTGAGTGGCCTGGCTGAAGGACTTGGAGGCAACAT
TGAACAGCTGGTAGCCCGAAGTAACATCCTGACACTAATGTATCAGTGCATGCAGGATAAAATGCCAGAAGTTCGACAGA
GTTCTTTTGCCCTGTTAGGTGACCTCACAAAAGCTTGCTTTCAGCATGTTAAGCCTTGTATAGCTGATTTCATGCCAATA
TTGGGAACCAACCTAAATCCAGAATTCATTTCAGTCTGCAACAATGCCACATGGGCAATTGGAGAAATCTCCATTCAAAT
GGGTATAGAGATGCAGCCTTATATTCCTATGGTGTTGCACCAGCTTGTAGAAATCATTAACAGACCCAACACACCAAAGA
CGTTGTTAGAGAATACAGCAATAACAATTGGTCGTCTTGGTTACGTTTGTCCTCAAGAGGTGGCCCCCATGCTACAGCAG
TTTATAAGACCCTGGTGCACCTCTCTGAGAAACATAAGAGACAATGAGGAAAAGGATTCAGCATTCCGTGGAATTTGTAC
CATGATCAGTGTGAATCCCAGTGGCGTAATCCAAGATTTTATATTTTTTTGTGATGCCGTTGCATCATGGATTAACCCAA
AAGATGATCTCAGAGACATGTTCTGTAAGATCCTTCATGGATTTAAAAATCAAGTTGGCGATGAAAATTGGAGGCGTTTC
TCTGACCAGTTTCCTCTTCCCTTAAAAGAGCGTCTTGCAGCTTTTTATGGTGTTTAA
ATGGTGTGGGACCGGCAAACCAAGATGGAGTATGAGTGGAAACCTGACGAGCAAGGGCTCCAGCAAATCCTGCAGTTGTT
GAAGGAGTCCCAGTCCCCAGACACCACCATCCAGAGAACCGTGCAACAAAAACTGGAACAACTTAATCAGTATCCAGACT
TTAACAACTACTTGATTTTTGTTCTTACAAAATTAAAATCTGAAGATGAACCCACAAGATCATTGAGTGGTCTTATCTTG
AAGAATAATGTGAAAGCACACTTTCAGAACTTCCCAAATGGTGTAACAGACTTTATTAAAAGTGAATGTTTAAATAATAT
TGGTGACTCCTCTCCTCTGATTAGAGCCACTGTTGGTATTTTGATCACAACTATAGCCTCCAAGGGAGAATTGCAGAATT
GGCCTGACCTCTTACCAAAACTCTGTAGCCTGTTGGATTCTGAAGATTATAATACCTGTGAGGGAGCATTTGGTGCCCTT
CAGAAGATTTGTGAAGATTCTGCTGAGATTTTAGACAGTGATGTTTTAGATCGTCCTCTCAACATCATGATTCCCAAATT
TTTACAGTTCTTCAAGCATAGTAGTCCAAAAATAAGGTCTCACGCTGTTGCATGTGTCAATCAGTTTATCATCAGTAGGA
CTCAAGCTCTAATGTTGCACATTGATTCTTTTATTGAGAATCTCTTTGCATTAGCTGGTGATGAAGAACCAGAGGTACGG
AAAAATGTGTGCCGAGCGCTTGTGATGTTGCTCGAAGTTCGAATGGATCGCCTGCTTCCTCACATGCATAATATAGTTGA
GTACATGCTACAGAGGACTCAAGATCAAGATGAAAATGTGGCTTTAGAAGCCTGTGAATTTTGGCTAACTTTAGCTGAAC
AGCCAATATGCAAAGATGTACTCGTAAGGCATCTTCCTAAGTTGATTCCTGTGTTAGTGAATGGCATGAAGTACTCAGAC
ATAGATATTATCCTACTTAAGGGTGATGTTGAAGAAGACGAAACGATTCCTGATAGTGAACAGGATATACGGCCACGTTT
TCACCGATCGAGGACGGTGGCTCAGCAGCATGATGAAGATGGAATTGAAGAGGAAGATGATGATGATGATGAAATTGATG
ATGATGATACAATTTCTGACTGGAATCTAAGAAAATGTTCTGCTGCTGCCCTGGATGTTCTTGCAAATGTGTATCGTGAT
GAACTGCTGCCACATATTTTGCCCCTTTTGAAAGAATTACTTTTTCATCATGAATGGGTTGTTAAAGAATCAGGCATTTT
GGTTTTAGGAGCAATTGCTGAAGGTTGCATGCAGGGCATGATTCCATACTTGCCTGAGCTTATTCCTCACCTTATTCAGT
GCCTCTCTGATAAAAAGGCTCTTGTGCGTTCCATAACATGCTGGACTCTTAGCCGCTATGCACACTGGGTGGTCAGCCAG
CCGCCAGACACGTACCTGAAGCCATTAATGACAGAATTGCTAAAGCGCATCCTGGATAGCAACAAGAGAGTACAAGAAGC
TGCCTGCAGTGCCTTTGCTACCCTAGAAGAGGAGGCTTGTACAGAACTTGTTCCTTACCTTGCTTATATACTTGATACCC
TGGTCTTTGCATTTAGTAAATACCAGCATAAGAACCTGCTCATTCTTTACGATGCCATAGGAACATTAGCAGATTCAGTA
GGACATCATTTAAACAAACCAGAATATATTCAGATGCTAATGCCTCCACTGATCCAGAAATGGAACATGTTAAAGGATGA
AGATAAAGATCTCTTCCCTTTACTTGAGTGCCTATCTTCAGTTGCCACAGCACTGCAGTCTGGCTTCCTTCCGTACTGTG
AACCTGTGTATCAGCGTTGTGTAAACCTAGTACAGAAGACTCTTGCACAAGCCATGCTAAACAATGCTCAACCAGATCAA
TATGAAGCTCCAGATAAAGATTTTATGATAGTGGCTCTTGATTTACTGAGTGGCCTGGCTGAAGGACTTGGAGGCAACAT
TGAACAGCTGGTAGCCCGAAGTAACATCCTGACACTAATGTATCAGTGCATGCAGGATAAAATGCCAGAAGTTCGACAGA
GTTCTTTTGCCCTGTTAGGTGACCTCACAAAAGCTTGCTTTCAGCATGTTAAGCCTTGTATAGCTGATTTCATGCCAATA
TTGGGAACCAACCTAAATCCAGAATTCATTTCAGTCTGCAACAATGCCACATGGGCAATTGGAGAAATCTCCATTCAAAT
GGGTATAGAGATGCAGCCTTATATTCCTATGGTGTTGCACCAGCTTGTAGAAATCATTAACAGACCCAACACACCAAAGA
CGTTGTTAGAGAATACAGCAATAACAATTGGTCGTCTTGGTTACGTTTGTCCTCAAGAGGTGGCCCCCATGCTACAGCAG
TTTATAAGACCCTGGTGCACCTCTCTGAGAAACATAAGAGACAATGAGGAAAAGGATTCAGCATTCCGTGGAATTTGTAC
CATGATCAGTGTGAATCCCAGTGGCGTAATCCAAGATTTTATATTTTTTTGTGATGCCGTTGCATCATGGATTAACCCAA
AAGATGATCTCAGAGACATGTTCTGTAAGATCCTTCATGGATTTAAAAATCAAGTTGGCGATGAAAATTGGAGGCGTTTC
TCTGACCAGTTTCCTCTTCCCTTAAAAGAGCGTCTTGCAGCTTTTTATGGTGTTTAA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP007412_brain_prefrontal_cortex | 40 .70 RPM |
| SRP007412_cerebellum | 64 .31 RPM |
| SRP007412_heart | 46 .11 RPM |
| SRP007412_kidney | 71 .81 RPM |
| SRP007412_liver | 27 .43 RPM |
| SRP007412_testis | 165 .56 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Homo sapiens | ENSG00000083312 | ortholog_one2one | 2 retrogenes | |
| Mus musculus | ENSMUSG00000009470 | ortholog_one2one | 1 retrogene | |
| Pongo abelii | ENSPPYG00000015545 | ortholog_one2one | 1 retrogene | |
| Tursiops truncatus | ENSTTRG00000000209 | ortholog_one2one | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_ptro_1176 | 90.21 | 57.91 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_ptro_3060 | 89.48 | 58.13 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSPTRG00000016972 retrocopies