Parental gene:

Ccdc43, ENSRNOG00000002748

Aliases:Ccdc43, RGD1311929
Description:Coiled-coil domain-containing protein 43 [Source:UniProtKB/Swiss-Prot;Acc:Q5BK07]
Organism:Rat (Rattus norvegicus)
Coordinates:10:90434923..90447114(-)


>ENSRNOG00000002748
ATGGCGGCGCCCAGCGAAGTGGCCGCGGCAGTCCTCGGTGAAGGCGATGGCGGGGGTTTTGGATCCTGGCTTGACGGACG
TTTGGAGGCGTTGGGAGTGGACCAAGCCGTTTACCGCGCTTACATCCTTGGCGTCCTACAGGAGGAGGAGGAAGAAGAGA
AGCTGGACGCCCTGCAGGGTATCCTCTCTGCTTTTCTGGAAGAAGATTCCCTCCTTGATATCTGTAAGGAAATTGTGGAA
CGATGGTCAGAAACAAGGGATGTCACCACCAAAGTAAAAAAAGAAGATGAGGTGCAGGCTATCACCACCTTGATTGAGAA
GCAGGCACAGATCGTGGTGAAGCCCAGAGTGGTTTCAGAAGAAGAGAAGCAGAGGAAAGCAGCCCTGTTAGCCCAGTATG
CGGATGTGACGGACGAAGAGACTGAAGCAGATGAGAAAGCTGATCCCGGTGCTTCAACAGCAAACATCGGTTCTGACAAA
AGCCTGTTCCGAAACACCAATGTGGAAGACGTTCTCAATGCTCGGAAGTTGGAGCGAGACTCACTTCGGGATGAGTCCCA
AAGGAAGAAGGAGCAGGACAAGCTGCAGAGGGAGAAGGACAAACTAGCCAAGCAGGAACGCAAGGAGAAGGAAAAGAAAA
GGACACAGAGAGGGGAACGAAAGCGATAA

Library Parental gene expression (RPM)
SRP017611_brain 11 .79 RPM
SRP017611_kidney 15 .14 RPM
SRP017611_liver 8 .07 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000018379 ortholog_one2one 1 retrogene
retro_amel_1479,
Canis familiaris ENSCAFG00000014115 ortholog_one2one 1 retrogene
retro_cfam_456,
Monodelphis domestica ENSMODG00000011411 ortholog_one2one 1 retrogene
retro_mdom_1378,
Mustela putorius furo ENSMPUG00000009224 ortholog_one2one 1 retrogene
retro_mputfur_1511,
Oryctolagus cuniculus ENSOCUG00000017526 ortholog_one2one 1 retrogene
retro_ocun_1500,
Ochotona princeps ENSOPRG00000006793 ortholog_one2one 2 retrogenes
retro_opri_263, retro_opri_699,
Sus scrofa ENSSSCG00000017352 ortholog_one2many 2 retrogenes
retro_sscr_173, retro_sscr_944,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_rnor_2906 71.17 72.07
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Download FASTA sequences of all ENSRNOG00000002748 retrocopies