Parental gene: | Rpa1, ENSRNOG00000003123 |
| Aliases: | Rpa1, Cb1-727 |
| Description: | replication protein A 70 kDa DNA-binding subunit [Source:RefSeq peptide;Acc:NP_001041308] |
| Organism: | Rat (Rattus norvegicus) |
| Coordinates: | 10:61855481..61897974(-) |
>ENSRNOG00000003123
ATGCAGCAGGGAGATACATCCATAAAACCCGTTCTTCAAGTCATTAACATCCGTCCCATTACTACAGGGAATAGTCCACC
GCGGTATCGACTGCTTATGAGTGATGGGTTGAACACGCTTTCCTCCTTCATGCTGGCCACGCAGCTGAACGCCCTGGTCG
AGGGGGGCCAGCTGGCCAGCAACTGTGTCTGCCAGGTCCACCGCTTCATCGTCAACACCCTGAAGGACGGAAGGAGAGTA
GTTATTTTGATGGACTTGGAAGTTGTGAAATCTGCTGGCGAAGTTGGAGTAAAGATTGGGAATCCAGTGCCCTATAATGA
AGGACATGCGCAGCAGCAAGCAGTCTCTGCCCCAGCCTCTGCAGCGACACCACCAGCCAGCAAGCCCCAACCGCAGAATG
GGAGCTTGGGAGTGGGTTCCACTGTAGCTAAGGCATACGGGGCCTCAAAGCCGTTTGGAAAGCCTGCTGGAACTGGCCTG
CTGCAGCCTACAAGTGGGACACAGTCCAAAGTGGTACCCATCGCCAGCCTCACCCCTTACCAATCCAAGTGGACGATTTG
TGCCCGTGTCACCAACAAAAGTCAGATCCGTACCTGGAGCAATTCCCGTGGGGAAGGAAAGCTCTTCTCTATAGAACTTG
TGGATGAAAGTGGTGAAATCAGAGCTACGGCTTTCAATGAGCAGGTGGACAAGTTCTTTCCCCTTATTGAAGTGAACAAG
GTGTATTACTTCTCCAAGGGCACTCTGAAAATCGCTAACAAACAGTTCTCAGCTGTTAAAAATGACTATGAGATGACCTT
CAATAATGAGACGTCTGTCCTTCCCTGCGAAGATGGCCATCACTTACCCACAGTTCAGTTTGACTTCACAGGGATCGGTG
ACCTAGAGAGCAAGTCTAAAGACTCACTTGTAGACATAATTGGAATCTGCAAGAGCTATGAAGATGCGACTAAAATCACA
GTGAAGTCTAACAACAGAGAAGTTGCTAAGAGAAATATCTGTTTGATGGACATGTCAGGGAAAGTGGTGACTGCGACGCT
GTGGGGAGAAGACGCTGACAAGTTTGACGGTTCTAGGCAGCCTGTGATGGCCATCAAAGGAGCCCGAGTGTCCGACTTTG
GTGGGCGGAGCCTCTCTGTCCTATCATCTAGCACTGTCCTTGTGAATCCTGACATCCCAGAGGCCTATAAGCTCCGTGGA
TGGCATTATGTCTTCGGAGATGGTGGCCTGAAAGCCCTCTTACACCGACAAGCCCACGATCCCCTGATGAACCTAGAGAG
TCAGAGAAAGCAATTAGAACTTAAGTGCTGCGTGCTGACCTTGATCCCACCAGGTAGACAAGGTTTTAACAGCTGCGTGC
TGGAGAGCAGTGCTGAGAGCATCTCCGGTTTGCGCTGTGGGCAGCTGATGTGGGGGTTTGACTCAGAAGGACAAGCCTTA
GATGGAGTTTCCATCTCTGATCTCAGGAGTGGAGGGACCGGAGGGAGCAACACCAACTGGAAAACTTTGTATGAAGCTAA
ATCCGAGAACCTGGGCCAGGGCGACAAGGCGGACTATTTCAGCACTGTGGCAACAGTGGTGTTTCTTCGCAAAGAGAACT
GTATGTACCAGGCCTGCCCGACCCAGGACTGCAATAAGAAAGTGATTGACCAGCAGAATGGGTTGTACCGCTGTGAGAAG
TGCGACCGGGAATTTCCCAATTTCAAATACCGCATGATCTTATCGGTAAATATTGCAGATTTTCAGGAGAATCAGTGGGT
GACGTGTTTCCAGGAGTCCGCGGAGGCCATTCTTGGACAGAACACTGTGTACCTTGGGGAACTCAAAGAGAAGGTTGGCT
GCGTGTTTGTCAGCATGAACGAGCAGGCGTTTGAAGAGGTTTTCCAGAATGCCAACTTCCGATCATTTACATTCAGAATC
AGAGTCAAGCTGGAGACCTACAATGATGAATCTCGAATTAAGGCCACTGTGATAGACGTGAAGCCCGTGGACTACAGAGA
CTATAGCAAAAGGCTGATCATGAACATCAGGAAGAACATTTGA
ATGCAGCAGGGAGATACATCCATAAAACCCGTTCTTCAAGTCATTAACATCCGTCCCATTACTACAGGGAATAGTCCACC
GCGGTATCGACTGCTTATGAGTGATGGGTTGAACACGCTTTCCTCCTTCATGCTGGCCACGCAGCTGAACGCCCTGGTCG
AGGGGGGCCAGCTGGCCAGCAACTGTGTCTGCCAGGTCCACCGCTTCATCGTCAACACCCTGAAGGACGGAAGGAGAGTA
GTTATTTTGATGGACTTGGAAGTTGTGAAATCTGCTGGCGAAGTTGGAGTAAAGATTGGGAATCCAGTGCCCTATAATGA
AGGACATGCGCAGCAGCAAGCAGTCTCTGCCCCAGCCTCTGCAGCGACACCACCAGCCAGCAAGCCCCAACCGCAGAATG
GGAGCTTGGGAGTGGGTTCCACTGTAGCTAAGGCATACGGGGCCTCAAAGCCGTTTGGAAAGCCTGCTGGAACTGGCCTG
CTGCAGCCTACAAGTGGGACACAGTCCAAAGTGGTACCCATCGCCAGCCTCACCCCTTACCAATCCAAGTGGACGATTTG
TGCCCGTGTCACCAACAAAAGTCAGATCCGTACCTGGAGCAATTCCCGTGGGGAAGGAAAGCTCTTCTCTATAGAACTTG
TGGATGAAAGTGGTGAAATCAGAGCTACGGCTTTCAATGAGCAGGTGGACAAGTTCTTTCCCCTTATTGAAGTGAACAAG
GTGTATTACTTCTCCAAGGGCACTCTGAAAATCGCTAACAAACAGTTCTCAGCTGTTAAAAATGACTATGAGATGACCTT
CAATAATGAGACGTCTGTCCTTCCCTGCGAAGATGGCCATCACTTACCCACAGTTCAGTTTGACTTCACAGGGATCGGTG
ACCTAGAGAGCAAGTCTAAAGACTCACTTGTAGACATAATTGGAATCTGCAAGAGCTATGAAGATGCGACTAAAATCACA
GTGAAGTCTAACAACAGAGAAGTTGCTAAGAGAAATATCTGTTTGATGGACATGTCAGGGAAAGTGGTGACTGCGACGCT
GTGGGGAGAAGACGCTGACAAGTTTGACGGTTCTAGGCAGCCTGTGATGGCCATCAAAGGAGCCCGAGTGTCCGACTTTG
GTGGGCGGAGCCTCTCTGTCCTATCATCTAGCACTGTCCTTGTGAATCCTGACATCCCAGAGGCCTATAAGCTCCGTGGA
TGGCATTATGTCTTCGGAGATGGTGGCCTGAAAGCCCTCTTACACCGACAAGCCCACGATCCCCTGATGAACCTAGAGAG
TCAGAGAAAGCAATTAGAACTTAAGTGCTGCGTGCTGACCTTGATCCCACCAGGTAGACAAGGTTTTAACAGCTGCGTGC
TGGAGAGCAGTGCTGAGAGCATCTCCGGTTTGCGCTGTGGGCAGCTGATGTGGGGGTTTGACTCAGAAGGACAAGCCTTA
GATGGAGTTTCCATCTCTGATCTCAGGAGTGGAGGGACCGGAGGGAGCAACACCAACTGGAAAACTTTGTATGAAGCTAA
ATCCGAGAACCTGGGCCAGGGCGACAAGGCGGACTATTTCAGCACTGTGGCAACAGTGGTGTTTCTTCGCAAAGAGAACT
GTATGTACCAGGCCTGCCCGACCCAGGACTGCAATAAGAAAGTGATTGACCAGCAGAATGGGTTGTACCGCTGTGAGAAG
TGCGACCGGGAATTTCCCAATTTCAAATACCGCATGATCTTATCGGTAAATATTGCAGATTTTCAGGAGAATCAGTGGGT
GACGTGTTTCCAGGAGTCCGCGGAGGCCATTCTTGGACAGAACACTGTGTACCTTGGGGAACTCAAAGAGAAGGTTGGCT
GCGTGTTTGTCAGCATGAACGAGCAGGCGTTTGAAGAGGTTTTCCAGAATGCCAACTTCCGATCATTTACATTCAGAATC
AGAGTCAAGCTGGAGACCTACAATGATGAATCTCGAATTAAGGCCACTGTGATAGACGTGAAGCCCGTGGACTACAGAGA
CTATAGCAAAAGGCTGATCATGAACATCAGGAAGAACATTTGA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP017611_liver | 21 .72 RPM |
| SRP017611_kidney | 41 .59 RPM |
| SRP017611_brain | 26 .60 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Choloepus hoffmanni | ENSCHOG00000013540 | ortholog_one2many | 2 retrogenes | |
| Ictidomys tridecemlineatus | ENSSTOG00000022475 | ortholog_one2one | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_rnor_1373 | 80.10 | 58.97 | Please wait, loading  | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSRNOG00000003123 retrocopies