Parental gene: | Pes1, ENSRNOG00000004515 |
| Aliases: | None |
| Description: | Pescadillo homolog [Source:UniProtKB/Swiss-Prot;Acc:Q3B8N8] |
| Organism: | Rat (Rattus norvegicus) |
| Coordinates: | 14:84895324..84911703(+) |
>ENSRNOG00000004515
ATGGGAGGTCTGGAAAAGAAGAAGTATGAACGAGGCTCTGCCACCAATTATATCACGAGAAACAAAGCTCGGAAGAAGCT
GCAGCTGAGCCTGCCTGATTTCAGGCGGCTGTGCATCCTGAAAGGTATTTATCCTCATGAACCCAAGCATAAGAAGAAAG
TTAACAAGGGTTCCACAGCAGCCCGAACATTTTACCTTATCAAAGATATTAAATTCCTCCTCCATGAACCCATCGTCAAC
AAGTTCCGAGAGTACAAGGTGTTTGTCCGGAAGCTCCGCAAAGCCTATGGGAAGAGCGAGTGGAATGCTGTAGAACGCCT
CAAGGACAATAAACCCAGCTACAAACTGGACCACATTGTCAAGGAGCGGTACCCCACATTTATCGATGCGTTGCGTGACC
TCGATGATGCCCTGTCCATGTGCTTCCTCTTCTCCACCTTCCCTCGGACGGGCAAGTGCCACGTGCAGACCATCCAGCTG
TGCCGCCGCCTCACCGTGGAGTTCATGCACTACGTCATTGCTGCCCGAGCCCTGCGCAAGGTCTTCCTGTCCATCAAAGG
CATCTACTATCAGGCTGAGGTGCTGGGTCAGCCCATCGTGTGGATTGCACCCTACGCTTTCTCCCATGATCATCCAACAG
ATGTGGACTACAGAGTCATGGCCACCTTCACTGAGTTCTATACCACTCTCCTGGGCTTCGTCAACTTCCGCCTCTACCAG
TCACTCAACCTTCACTACCCACCCAAGATTGAAAGTCAAGCCCAAGCAGAGATGAAGGTCAGCGAGGACACATATGCATT
GGATTCCGAGAGCTCTATGGAGAAACTGGCTGCCCTCAGTGCCAGCCTGGCCCGAGTGGTGGTGCCTGCTGTAGAGGAGG
CTGAGGCTGATGAGTTTCCCACTGACGGGGAAGTGACAGCACAGGAGGAAGATCGAAGGAAAGAGCTGGAGGCTCAGGAA
AAACACAAGAAGCTCTTTGAAGGCCTGAAGTTCTTCCTGAACCGAGAGGTGCCCCGTGAAGCGTTGGCCTTCATCATCAG
GAGTTTTGGTGGGGATGTATCCTGGGACAAGTCTTTGTGCATTGGAGCCACCTATGACAGCACAGACTCTGGCATCACCC
ACCAGATTGTTGATCGGCCGGGGCAGCAAACCCCCATCATTGGCAGGTACTACGTACAGCCCCAGTGGGTGTTTGACTGT
GTGAATGCCCGACTCCTCCTCCCTGTGGCAGAGTACTTCCCTGGGGTGCAGCTGCCCCCACACCTTTCACCCTTCGTGTC
TGAGAAGGAAGGAGATTACATTCCCCCTGAGAAGCTGAAGCTCCTGGCTTTGCAGCGGGGAGAAGACCCAGGAAACTTGG
AAGAGGAAGAGGAAGACGAGGATGATGAAGGCGATGACAGCGAAGGTGACGGTGATGTTGCAGTGGAAAACGAGGAGGAA
GTTGTGGAAGCTGAGTCAGAGGAGGAGGAGGAGGCGCACCTGTCAGCCTTGGAGCAGCAGAGGCTGGGAGGGAAGAAGCC
CCAGGTTATGGCCGGCACTGTGAAGCTGGAAGACAGGCAGCGGCTGGCCCAGGAGGAAGAAAGTGAGGCCAAGCGCCTGG
CCATCATGATGATGAAGAAGCGAGAGAAGTACCTTTATCAAAAGATCATGTTTGGCAAGCGGCGCAAAATCCGAGAGGCC
AACAAGCTTGCAGAGAAGAGGAAAGCCCATGACGACGCTGTGAGGTCTGAGAAAAAGGCCAAGAGGACAAGACCTGTGTG
A
ATGGGAGGTCTGGAAAAGAAGAAGTATGAACGAGGCTCTGCCACCAATTATATCACGAGAAACAAAGCTCGGAAGAAGCT
GCAGCTGAGCCTGCCTGATTTCAGGCGGCTGTGCATCCTGAAAGGTATTTATCCTCATGAACCCAAGCATAAGAAGAAAG
TTAACAAGGGTTCCACAGCAGCCCGAACATTTTACCTTATCAAAGATATTAAATTCCTCCTCCATGAACCCATCGTCAAC
AAGTTCCGAGAGTACAAGGTGTTTGTCCGGAAGCTCCGCAAAGCCTATGGGAAGAGCGAGTGGAATGCTGTAGAACGCCT
CAAGGACAATAAACCCAGCTACAAACTGGACCACATTGTCAAGGAGCGGTACCCCACATTTATCGATGCGTTGCGTGACC
TCGATGATGCCCTGTCCATGTGCTTCCTCTTCTCCACCTTCCCTCGGACGGGCAAGTGCCACGTGCAGACCATCCAGCTG
TGCCGCCGCCTCACCGTGGAGTTCATGCACTACGTCATTGCTGCCCGAGCCCTGCGCAAGGTCTTCCTGTCCATCAAAGG
CATCTACTATCAGGCTGAGGTGCTGGGTCAGCCCATCGTGTGGATTGCACCCTACGCTTTCTCCCATGATCATCCAACAG
ATGTGGACTACAGAGTCATGGCCACCTTCACTGAGTTCTATACCACTCTCCTGGGCTTCGTCAACTTCCGCCTCTACCAG
TCACTCAACCTTCACTACCCACCCAAGATTGAAAGTCAAGCCCAAGCAGAGATGAAGGTCAGCGAGGACACATATGCATT
GGATTCCGAGAGCTCTATGGAGAAACTGGCTGCCCTCAGTGCCAGCCTGGCCCGAGTGGTGGTGCCTGCTGTAGAGGAGG
CTGAGGCTGATGAGTTTCCCACTGACGGGGAAGTGACAGCACAGGAGGAAGATCGAAGGAAAGAGCTGGAGGCTCAGGAA
AAACACAAGAAGCTCTTTGAAGGCCTGAAGTTCTTCCTGAACCGAGAGGTGCCCCGTGAAGCGTTGGCCTTCATCATCAG
GAGTTTTGGTGGGGATGTATCCTGGGACAAGTCTTTGTGCATTGGAGCCACCTATGACAGCACAGACTCTGGCATCACCC
ACCAGATTGTTGATCGGCCGGGGCAGCAAACCCCCATCATTGGCAGGTACTACGTACAGCCCCAGTGGGTGTTTGACTGT
GTGAATGCCCGACTCCTCCTCCCTGTGGCAGAGTACTTCCCTGGGGTGCAGCTGCCCCCACACCTTTCACCCTTCGTGTC
TGAGAAGGAAGGAGATTACATTCCCCCTGAGAAGCTGAAGCTCCTGGCTTTGCAGCGGGGAGAAGACCCAGGAAACTTGG
AAGAGGAAGAGGAAGACGAGGATGATGAAGGCGATGACAGCGAAGGTGACGGTGATGTTGCAGTGGAAAACGAGGAGGAA
GTTGTGGAAGCTGAGTCAGAGGAGGAGGAGGAGGCGCACCTGTCAGCCTTGGAGCAGCAGAGGCTGGGAGGGAAGAAGCC
CCAGGTTATGGCCGGCACTGTGAAGCTGGAAGACAGGCAGCGGCTGGCCCAGGAGGAAGAAAGTGAGGCCAAGCGCCTGG
CCATCATGATGATGAAGAAGCGAGAGAAGTACCTTTATCAAAAGATCATGTTTGGCAAGCGGCGCAAAATCCGAGAGGCC
AACAAGCTTGCAGAGAAGAGGAAAGCCCATGACGACGCTGTGAGGTCTGAGAAAAAGGCCAAGAGGACAAGACCTGTGTG
A
| Library | Parental gene expression (RPM) |
|---|---|
| SRP017611_liver | 23 .40 RPM |
| SRP017611_kidney | 37 .33 RPM |
| SRP017611_brain | 36 .02 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Callithrix jacchus | ENSCJAG00000010617 | possible_ortholog | 1 retrogene | |
| Cavia porcellus | ENSCPOG00000003565 | ortholog_one2many | 1 retrogene | |
| Homo sapiens | ENSG00000100029 | possible_ortholog | 1 retrogene | |
| Mus musculus | ENSMUSG00000020430 | ortholog_one2one | 2 retrogenes | |
| Otolemur garnettii | ENSOGAG00000005804 | possible_ortholog | 1 retrogene | |
| Pongo abelii | ENSPPYG00000011716 | possible_ortholog | 1 retrogene | |
| Pan troglodytes | ENSPTRG00000014251 | possible_ortholog | 2 retrogenes | |
| Tupaia belangeri | ENSTBEG00000009825 | possible_ortholog | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_rnor_824 | 78.22 | 64.68 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_rnor_2953 | 68.64 | 85.32 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSRNOG00000004515 retrocopies