Parental gene: | Eif4b, ENSRNOG00000010103 |
| Aliases: | None |
| Description: | eukaryotic translation initiation factor 4B [Source:RefSeq peptide;Acc:NP_001008325] |
| Organism: | Rat (Rattus norvegicus) |
| Coordinates: | 7:141476182..141497938(+) |
>ENSRNOG00000010103
ATGGCGGCCTCAGCAAAAAAGAAGAATAAGAAGGGGAAGACCATCTCCCTAACAGACTTTCTAGCTGAGGATGGGGGAAC
TGGTGGAGGAAGCACCTATGTCCCCAAACCAGTCAGCTGGGCTGATGAAACAGACGATCTGGAAGGAGATGTGTCAACAA
CTTGGCATAGTAACGATGACGATGTGTACAGGGCACCTCCTATTGACCGTTCCATCCTTCCCACTGCTCCACGGGCTGCT
CGGGAACCCAATATTGATCGGAGCCGTCTTCCCAAGTCACCACCCTACACTGCTTTCCTAGGGAATCTGCCCTATGATGT
GACAGAAGACTCTATTAAGGATTTCTTTAGAGGATTAAATATCAGCGCTGTACGCTTGCCGCGTGAGCCCAGCAATCCAG
ACAGGTTGAAAGGTTTTGGCTATGCCGAATTTGAGGATCTGGATTCTCTGCTCAGTGCTCTGAGTCTCAATGAAGAGTCT
CTAGGTAACAGGAGAATTCGGGTGGATGTTGCTGATCAAGCACAGGATAAAGACAGGGATGACCGTTCTTTTGGTCGAGA
TAGAAATCGGGATTCTGACAAGACAGACACAGACTGGAGGGCCCGTCCTGCCACAGACAGCTTTGATGACTACCCACCTA
GACGAGGTGATGACAGCTTCGGAGACAAGTATCGAGATCGTTACGAGTCAGACCGGTATCGGGATGGGTATAGGGACGGA
TATCGGGACGGCCCACGCAGAGACATGGACCGCTATGGGGGCCGGGATCGCTATGATGACCGAGGCAGCAGAGACTATGA
CCGAGGCTATGACTCCAGGATAGGCAGTGGCAGAAGAGCATTTGGAAGTGGGTACCGGAGGGATGACGACTACAGAGGAG
GTGGGGACCGCTATGAAGATCGCTATGACAGACGGGACGATCGGTCATGGAGCTCCAGGGACGATTACTCTCGGGACGAT
TACAGGCGTGATGACAGAGGTCCCCCCCAAAGACCCAAACTGAATCTAAAGCCTCGGAGTACTCCTAAAGAAGATGATTC
CTCTGCTAGCACCTCCCAGTCCAGCCGAGCGGCTTCTATCTTTGGAGGGGCGAAGCCTGTTGACACAGCTGCTAGAGAAA
GAGAAGTAGAGGAGCGGCTACAGAAGGAGCAGGAGAAGCTGCAGCGTCAGCTGGATGAGCCAAAACTAGACCGCCGGCCC
CGGGAGAGACACCCAAGTTGGCGAAGTGAAGAAACTCAGGAAAGAGAACGGTCGAGGACAGGAAGTGAGTCATCGCAGAC
TGGGACCTCAGCCACATCTGGCAGAAATACACGAAGGAGAGAGAGTGAGAAGTCTCTAGAAAATGAAACCCTCAATAAAG
AAGAAGACTGTCACTCTCCAACCTCTAAGCCTCCTAAACCTGACCAGCCTCTAAAGGTAATGCCAGCCCCTCCACCAAAG
GAGAATGCGTGGGTGAAGCGAAGCTCTAACCCTCCTGCTCGATCTCAGAGCTCAGACACAGAGCAGCCGTCCCCTACAAG
TGGTGGAGGGAAAGTTGCTCCAGCTCAGCCCTCTGAGGAAGGACCATCAAGGAAAGATGAAACTAAAGTGGATGGGGTGA
GCACCACCAAAGGCCAGACTGGACACTCCAGCCGTGGTCCTGGGGATGGAGGGAGCAGAGACCACTGGAAGGAGTTGGAT
AGGAAGGACGGCAAAAAAGATCAAGACTCCAGATCTGCACCTGAGCCAAAGAAATCTGAGGAGAACCGAGCCTCTAAGTT
CAGTTCTGCAAGCAAGTACGCTGCTCTGTCTGTGGACGGTGAGGATGAGGATGAGGGAGACGACTGCACTGAGTAG
ATGGCGGCCTCAGCAAAAAAGAAGAATAAGAAGGGGAAGACCATCTCCCTAACAGACTTTCTAGCTGAGGATGGGGGAAC
TGGTGGAGGAAGCACCTATGTCCCCAAACCAGTCAGCTGGGCTGATGAAACAGACGATCTGGAAGGAGATGTGTCAACAA
CTTGGCATAGTAACGATGACGATGTGTACAGGGCACCTCCTATTGACCGTTCCATCCTTCCCACTGCTCCACGGGCTGCT
CGGGAACCCAATATTGATCGGAGCCGTCTTCCCAAGTCACCACCCTACACTGCTTTCCTAGGGAATCTGCCCTATGATGT
GACAGAAGACTCTATTAAGGATTTCTTTAGAGGATTAAATATCAGCGCTGTACGCTTGCCGCGTGAGCCCAGCAATCCAG
ACAGGTTGAAAGGTTTTGGCTATGCCGAATTTGAGGATCTGGATTCTCTGCTCAGTGCTCTGAGTCTCAATGAAGAGTCT
CTAGGTAACAGGAGAATTCGGGTGGATGTTGCTGATCAAGCACAGGATAAAGACAGGGATGACCGTTCTTTTGGTCGAGA
TAGAAATCGGGATTCTGACAAGACAGACACAGACTGGAGGGCCCGTCCTGCCACAGACAGCTTTGATGACTACCCACCTA
GACGAGGTGATGACAGCTTCGGAGACAAGTATCGAGATCGTTACGAGTCAGACCGGTATCGGGATGGGTATAGGGACGGA
TATCGGGACGGCCCACGCAGAGACATGGACCGCTATGGGGGCCGGGATCGCTATGATGACCGAGGCAGCAGAGACTATGA
CCGAGGCTATGACTCCAGGATAGGCAGTGGCAGAAGAGCATTTGGAAGTGGGTACCGGAGGGATGACGACTACAGAGGAG
GTGGGGACCGCTATGAAGATCGCTATGACAGACGGGACGATCGGTCATGGAGCTCCAGGGACGATTACTCTCGGGACGAT
TACAGGCGTGATGACAGAGGTCCCCCCCAAAGACCCAAACTGAATCTAAAGCCTCGGAGTACTCCTAAAGAAGATGATTC
CTCTGCTAGCACCTCCCAGTCCAGCCGAGCGGCTTCTATCTTTGGAGGGGCGAAGCCTGTTGACACAGCTGCTAGAGAAA
GAGAAGTAGAGGAGCGGCTACAGAAGGAGCAGGAGAAGCTGCAGCGTCAGCTGGATGAGCCAAAACTAGACCGCCGGCCC
CGGGAGAGACACCCAAGTTGGCGAAGTGAAGAAACTCAGGAAAGAGAACGGTCGAGGACAGGAAGTGAGTCATCGCAGAC
TGGGACCTCAGCCACATCTGGCAGAAATACACGAAGGAGAGAGAGTGAGAAGTCTCTAGAAAATGAAACCCTCAATAAAG
AAGAAGACTGTCACTCTCCAACCTCTAAGCCTCCTAAACCTGACCAGCCTCTAAAGGTAATGCCAGCCCCTCCACCAAAG
GAGAATGCGTGGGTGAAGCGAAGCTCTAACCCTCCTGCTCGATCTCAGAGCTCAGACACAGAGCAGCCGTCCCCTACAAG
TGGTGGAGGGAAAGTTGCTCCAGCTCAGCCCTCTGAGGAAGGACCATCAAGGAAAGATGAAACTAAAGTGGATGGGGTGA
GCACCACCAAAGGCCAGACTGGACACTCCAGCCGTGGTCCTGGGGATGGAGGGAGCAGAGACCACTGGAAGGAGTTGGAT
AGGAAGGACGGCAAAAAAGATCAAGACTCCAGATCTGCACCTGAGCCAAAGAAATCTGAGGAGAACCGAGCCTCTAAGTT
CAGTTCTGCAAGCAAGTACGCTGCTCTGTCTGTGGACGGTGAGGATGAGGATGAGGGAGACGACTGCACTGAGTAG
| Library | Parental gene expression (RPM) |
|---|---|
| SRP017611_liver | 122 .51 RPM |
| SRP017611_kidney | 258 .40 RPM |
| SRP017611_brain | 176 .15 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Ailuropoda melanoleuca | ENSAMEG00000012023 | ortholog_one2many | 2 retrogenes | |
| Canis familiaris | ENSCAFG00000007117 | ortholog_one2many | 2 retrogenes | |
| Choloepus hoffmanni | ENSCHOG00000001608 | ortholog_one2many | 2 retrogenes | |
| Callithrix jacchus | ENSCJAG00000018176 | possible_ortholog | 2 retrogenes | |
| Cavia porcellus | ENSCPOG00000005595 | possible_ortholog | 3 retrogenes | |
| Homo sapiens | ENSG00000063046 | possible_ortholog | 7 retrogenes | |
| Gorilla gorilla | ENSGGOG00000013695 | possible_ortholog | 5 retrogenes | |
| Loxodonta africana | ENSLAFG00000009534 | ortholog_one2many | 1 retrogene | |
| Macropus eugenii | ENSMEUG00000012341 | ortholog_one2many | 2 retrogenes | |
| Macaca mulatta | ENSMMUG00000001062 | possible_ortholog | 5 retrogenes | |
| Mus musculus | ENSMUSG00000058655 | ortholog_one2many | 1 retrogene | |
| Nomascus leucogenys | ENSNLEG00000017727 | possible_ortholog | 3 retrogenes | |
| Pongo abelii | ENSPPYG00000025848 | possible_ortholog | 7 retrogenes | |
| Rattus norvegicus | ENSRNOG00000001454 | within_species_paralog | 1 retrogene | |
| Ictidomys tridecemlineatus | ENSSTOG00000006800 | possible_ortholog | 1 retrogene | |
| Tupaia belangeri | ENSTBEG00000005423 | possible_ortholog | 2 retrogenes | |
| Tarsius syrichta | ENSTSYG00000012880 | ortholog_one2many | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_rnor_2467 | 61.37 | 50.41 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_rnor_2972 | 88.11 | 53.36 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSRNOG00000010103 retrocopies