RetrogeneDB ID: | retro_cpor_752 | ||
Retrocopylocation | Organism: | Guinea Pig (Cavia porcellus) | |
Coordinates: | scaffold_26:9371270..9372712(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSCPOG00000005595 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 94. % |
Parental protein coverage: | 78.76 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | KKNKKGKTISLTDFLAEDGGTGGGTTYVPKPVSWADETDDLEGDVSTTWHSNDDDVYRAPPIDRSILPTA |
KKNKKGKTISLTDFLAEDGGT.G.TTYVPKPVSWADETDDLEGDVSTTWHSNDDDVYRAPPIDRSILPTA | |
Retrocopy | KKNKKGKTISLTDFLAEDGGTSGRTTYVPKPVSWADETDDLEGDVSTTWHSNDDDVYRAPPIDRSILPTA |
Parental | PRAAREPNIDRSRLPKSPPYTAFLGNLPYEVTEDSIKEFFRGLNISAVRLPREPSNPDRLKGFGYAEFED |
P.AA.EPNI....LPKSPPYTAFL..LPYEVTEDSIKEFFRGLNISAV.LPREPSNPDRLKGFGYAEFED | |
Retrocopy | PWAAWEPNINWRHLPKSPPYTAFL*KLPYEVTEDSIKEFFRGLNISAVHLPREPSNPDRLKGFGYAEFED |
Parental | LDSLLSALSLNEESLGNRRIRVDVADQAQDKDRDDRSFGRDRNRDSDKTDTDWRARPATDSFDDYPPRRG |
LDSLLS.LSLNEESLGNRRIRVDVADQAQDKDRDD.S.G..RN.DSDKTDT.WRARPATDSFDDYPPRRG | |
Retrocopy | LDSLLSTLSLNEESLGNRRIRVDVADQAQDKDRDDHSCGQYRNQDSDKTDTEWRARPATDSFDDYPPRRG |
Parental | DDSFGDKYRDRYDSDRYRDGYRDRDGYRDGPRRDMDRYGGRDRYDDRGSRDYDRGYDSRIGSGRRAFGSG |
.DSFGDKYR.RYDSDRYRDGYRDR.GYRDGPR.DMDRYGGRDRYDDRGSRDYDRGYDSRIGSGRRAFGSG | |
Retrocopy | -DSFGDKYRARYDSDRYRDGYRDRVGYRDGPRWDMDRYGGRDRYDDRGSRDYDRGYDSRIGSGRRAFGSG |
Parental | YRRDDDYRGGGDRYEDRYDRRDDRPWGSRDDYSRDDYRRDDRGPPQRPKLNLKPRSTPKEDDSSASTSQS |
YRRDDDYRGGGDRYE..YDRRDDRPWGSRDD.S.DDYRRDDRGPPQRPKLNLKPRSTPKEDDSSASTSQS | |
Retrocopy | YRRDDDYRGGGDRYENQYDRRDDRPWGSRDDHSWDDYRRDDRGPPQRPKLNLKPRSTPKEDDSSASTSQS |
Parental | SRAASIFGGAKPVDTAAREREVEERLQKEQEKLQRQLDEPKLERRPR-ERHPSWRSEETQERERSRTGSE |
SRAASIFGGAKPVDTAAREREVEERLQKEQEKLQRQLDEPKLERRPR.ERHPSW.SEETQE.ERSRTGSE | |
Retrocopy | SRAASIFGGAKPVDTAAREREVEERLQKEQEKLQRQLDEPKLERRPR<ERHPSW*SEETQEWERSRTGSE |
Parental | SSQTGTSAPSGRNARRRESEKSLENETLSKEEDCHSPTSKPPKPDQPLKVMPAPPPKENAWVK |
SSQTGTSAPSGRNARRRESEKSLENETLSKEEDCHSPTSKPPKPDQPLKVMPAPPPKENAWVK | |
Retrocopy | SSQTGTSAPSGRNARRRESEKSLENETLSKEEDCHSPTSKPPKPDQPLKVMPAPPPKENAWVK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .12 RPM | 70 .40 RPM |
SRP017611_kidney | 0 .21 RPM | 93 .38 RPM |
SRP017611_liver | 0 .26 RPM | 90 .88 RPM |
SRP040447_lung | 0 .03 RPM | 98 .49 RPM |
SRP040447_skeletal_muscle | 0 .05 RPM | 104 .17 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000012023 | 2 retrocopies | |
Canis familiaris | ENSCAFG00000007117 | 2 retrocopies | |
Choloepus hoffmanni | ENSCHOG00000001608 | 2 retrocopies | |
Callithrix jacchus | ENSCJAG00000018176 | 2 retrocopies | |
Cavia porcellus | ENSCPOG00000005595 | 3 retrocopies |
retro_cpor_278, retro_cpor_752 , retro_cpor_937,
|
Homo sapiens | ENSG00000063046 | 7 retrocopies | |
Gorilla gorilla | ENSGGOG00000013695 | 5 retrocopies | |
Loxodonta africana | ENSLAFG00000009534 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000012341 | 2 retrocopies | |
Macaca mulatta | ENSMMUG00000001062 | 5 retrocopies | |
Mus musculus | ENSMUSG00000058655 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000017727 | 3 retrocopies | |
Pongo abelii | ENSPPYG00000025848 | 7 retrocopies | |
Rattus norvegicus | ENSRNOG00000010103 | 2 retrocopies | |
Ictidomys tridecemlineatus | ENSSTOG00000006800 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000005423 | 2 retrocopies | |
Tarsius syrichta | ENSTSYG00000012880 | 1 retrocopy |