Parental gene:

Rpf1, ENSRNOG00000015969

Aliases:Rpf1, Bxdc5
Description:ribosome production factor 1 [Source:RefSeq peptide;Acc:NP_001094264]
Organism:Rat (Rattus norvegicus)
Coordinates:2:270895281..270909803(-)


>ENSRNOG00000015969
ATGGCGAAGGCCGGCGAGAAAAGTGGCGGTGGTGGCAAGCGAGGCTTGAAGAGGAAAGCGCCCGCTGAAGAGCCTCAAGA
AACTGCGGTCGCGAGCGATGGGACGGCGGAGAGCGGGGTACAGTCCGCGAAAGCGGCTGCCTTCCCCCCGGGCTTCAGTA
TCTCGGAGATTAAGAACAAACAGCGGCGACACTTGATGTTCACGCGGTGGAAACAGCAGCAGCGGAAGGAAAAGTTGGCA
GCTAAGAAAAAACTTAAAAGGGAGAGAGAGGCTCTTGGTGATAAGGCTCCACCGAAGCCTGTACCCAAGACCATTGACAA
CCAACGCGTGTACGATGAGACCACAGTAGACCCCAATGATGAAGAGGTGGCTTATGATGAGGCTACAGATGAATTTGCTT
CTTACTTCAACAGACAGACGTCTCCTAAGATTCTTATCACAACCTCAGACAGACCTCATGGGAGAACAGTACGACTCTGT
GAGCAGCTCTCAACAGTTATACCGGATTCACATGTTTATTACAGAAGAGGACTGGCTCTGAAAAAAATTATCCCACAGTG
CATTGCAAGAGATTTCACAGACCTAATCGTTATTAATGAAGATCGTAAAACACCAAATGGACTTATTTTGAGTCATTTGC
CAAATGGTCCAACTGCTCATTTTAAAATGAGTAGTGTTCGTCTTCGTAAAGAAATTAAGCGACGAGGCAAAGACCCCACA
GAACATGTACCTGAGATAATTCTAAACAACTTTACCACACGGCTAGGTCACTCTATCGGACGTATGTTTGCTTCTCTCTT
TCCTCATAACCCTCAATTTATTGGAAGACAAGTTGCCACGTTCCACAATCAGCGGGATTACATCTTCTTCAGGTTTCACA
GATACATATTCAAGAGTGAAAAGAAGGTGGGAATTCAGGAACTTGGACCACGTTTTACCTTAAAATTACGATCTCTGCAG
AAGGGAACCTTTGATTCCAAGTATGGAGAGTATGAATGGGTCCATAAGCCACGGGAAATGGATACAAGTAGAAGAAAATT
CCATTTATAA

Library Parental gene expression (RPM)
SRP017611_brain 10 .28 RPM
SRP017611_kidney 15 .42 RPM
SRP017611_liver 8 .81 RPM



Species Parental gene accession Homology type Retrogenes number
Erinaceus europaeus ENSEEUG00000001097 ortholog_one2many 1 retrogene
retro_eeur_17,
Myotis lucifugus ENSMLUG00000016028 ortholog_one2one 2 retrogenes
retro_mluc_681, retro_mluc_942,
Mus musculus ENSMUSG00000028187 ortholog_one2one 1 retrogene
retro_mmus_3026,
Oryctolagus cuniculus ENSOCUG00000014803 ortholog_one2one 1 retrogene
retro_ocun_1133,
Pteropus vampyrus ENSPVAG00000003729 ortholog_one2one 1 retrogene
retro_pvam_1489,
Tupaia belangeri ENSTBEG00000013600 ortholog_one2many 4 retrogenes
retro_tbel_1027, retro_tbel_2204, retro_tbel_2279, retro_tbel_63,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_rnor_1372 71.63 100.00
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Download FASTA sequences of all ENSRNOG00000015969 retrocopies