Parental gene:

TAGLN2, ENSSSCG00000006395

Aliases:None
Description:transgelin 2 [Source:HGNC Symbol;Acc:11554]
Organism:Pig (Sus scrofa)
Coordinates:4:98615628..98624083(-)


>ENSSSCG00000006395
TCCACACAGCCACCACTGCCCTTCGGAATGGCCAACAGGGGACCTGCCTATGGTCTGAGCCGGGAGGTGCAGCAGAAGAT
TGAGAAACAATACGATGCAGATCTGGAGCAGATCCTGATCCAGTGGATCACTACCCAGTGCCGCAAGGATGTGGGCCGGC
CCCAGCCTGGGCGCGAAAACTTTCAGAACTGGCTCAAGGACGGCACGGTGCTGTGTGAGCTTATTAATGGGCTGTACCCC
GAGGGGCAGGCCCCCGTGAAGAAGATCCAGGCCTCCACCATGGCCTTCAAGCAGATGGAACAGATCTCCCAGTTCCTGCA
AGCAGCCGAGCGCTATGGCATCAACACCACTGACATCTTCCAGACTGTGGACCTCTGGGAAGGAAAGAACATGGCCTGTG
TGCAGCGGACGCTGATGAACCTGGGCGGGCTAGCGGTAGCCCGGGATGATGGGCTCTTTTCCGGGGATCCCAACTGGTTT
CCCAAGAAATCTAAGGAAAACCCCCGGAACTTCTCCGACAACCAGCTGCAGGAGGGCAAGAATGTGATCGGGTTGCAGAT
GGGGACCAACCGCGGGGCATCCCAGGCAGGCATGACCGGCTATGGCATGCCACGCCAGATCCTCTGA

Library Parental gene expression (RPM)
SRP014902_placenta 695 .38 RPM
SRP014902_testis 236 .22 RPM
SRP018856_adipose 136 .02 RPM
SRP018288_kidney 182 .73 RPM
SRP018288_lung 661 .97 RPM
SRP018288_liver 154 .47 RPM
SRP018288_heart 61 .14 RPM
SRP035408_liver 167 .92 RPM
SRP035408_brain 12 .89 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000002068 ortholog_one2one 1 retrogene
retro_btau_1701,
Callithrix jacchus ENSCJAG00000006156 ortholog_one2one 2 retrogenes
retro_cjac_2035, retro_cjac_2444,
Homo sapiens ENSG00000158710 ortholog_one2one 1 retrogene
retro_hsap_4108,
Macropus eugenii ENSMEUG00000006573 ortholog_one2one 9 retrogenes
retro_meug_1092, retro_meug_1242, retro_meug_128, retro_meug_1442, retro_meug_1998, retro_meug_309, retro_meug_483, retro_meug_690, retro_meug_880,
Myotis lucifugus ENSMLUG00000026228 ortholog_one2many 1 retrogene
retro_mluc_274,
Macaca mulatta ENSMMUG00000004705 ortholog_one2one 1 retrogene
retro_mmul_2328,
Monodelphis domestica ENSMODG00000010032 ortholog_one2one 1 retrogene
retro_mdom_1178,
Nomascus leucogenys ENSNLEG00000013350 ortholog_one2one 1 retrogene
retro_nleu_575,
Pongo abelii ENSPPYG00000000648 ortholog_one2one 2 retrogenes
retro_pabe_3310, retro_pabe_3364,
Pan troglodytes ENSPTRG00000001533 ortholog_one2one 1 retrogene
retro_ptro_2788,
Tarsius syrichta ENSTSYG00000001645 ortholog_one2one 2 retrogenes
retro_tsyr_1911, retro_tsyr_950,
Tursiops truncatus ENSTTRG00000001814 ortholog_one2one 1 retrogene
retro_ttru_1614,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_sscr_312 88.52 100.00
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2. retro_sscr_313 88.94 100.00
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Download FASTA sequences of all ENSSSCG00000006395 retrocopies