Parental gene: | VDAC2, ENSSSCG00000010320 |
| Aliases: | None |
| Description: | voltage-dependent anion channel 2 [Source:HGNC Symbol;Acc:12672] |
| Organism: | Pig (Sus scrofa) |
| Coordinates: | JH118641.1:10524..22938(+) |
>ENSSSCG00000010320
ATGGCGTCCTATGGACAGACCTGCCCACGGCCAATGTGTATTCCGCCATCATATGCTGACCTTGGCAAAGCTGCCAGAGA
TATTTTCAACAAAGGATTTGGTTTTGGGTTGGTGAAACTGGATGTGAAAACAAAGTCATGCAGTGGCGTGGAATTCTCAA
CATCTGGTTCATCTAATACAGACACTGGTAAAGTTACTGGGACCTTGGAGACCAAATATAAATGGTGTGAGTATGGTCTG
ACTTTCACAGAAAAGTGGAACACTGATAACACTCTGGGAACAGAAATCGCTATTGAAGACCAGATTTGTCAAGGTTTGAA
ACTGACATTTGATACCACCTTTTCACCAAACACAGGGAAGAAAAGTGGTAAAATCAAGTCTTCTTACAAGAGGGAGTGTG
TAAACCTTGGTTGTGATGTTGACTTTGATTTTGCTGGACCTGCAATCCATGGTTCAGCTGTCTTTGGTTATGAGGGCTGG
GTGGCATATTATGATATGAGGCTTGATGATTGCCTAAAAGCCAAATTAAATAAAAATGATGCATTGGTAAACAACAGAAA
AAGAAATTTTTATTTTTTCTATTATAGCAATGATGGGACAGAATTTGGAGGATCAATTTATCAGAAAGTATGTGAAGATC
TTGACACTTCAGTAAACCTTGCTTGGACATCAGGAACCAACTGCACTCGCTTTGGCATTGCAGCTAAATATCAGTTGGAT
CCCACTGCTTCCATTTCTGCAAAAGTCAACAACTCTAGTTTAATTGGAGTGGGCTACACTCAGACCCTGAGGCCTGGTGT
GAAGCTGACACTGTCTGCTCTGGTAGATGGGAAGAGCATTAATGCTGGAGGCCACAAACTTGGGCTTGCCCTGGAGTTGG
AGGCTTAA
ATGGCGTCCTATGGACAGACCTGCCCACGGCCAATGTGTATTCCGCCATCATATGCTGACCTTGGCAAAGCTGCCAGAGA
TATTTTCAACAAAGGATTTGGTTTTGGGTTGGTGAAACTGGATGTGAAAACAAAGTCATGCAGTGGCGTGGAATTCTCAA
CATCTGGTTCATCTAATACAGACACTGGTAAAGTTACTGGGACCTTGGAGACCAAATATAAATGGTGTGAGTATGGTCTG
ACTTTCACAGAAAAGTGGAACACTGATAACACTCTGGGAACAGAAATCGCTATTGAAGACCAGATTTGTCAAGGTTTGAA
ACTGACATTTGATACCACCTTTTCACCAAACACAGGGAAGAAAAGTGGTAAAATCAAGTCTTCTTACAAGAGGGAGTGTG
TAAACCTTGGTTGTGATGTTGACTTTGATTTTGCTGGACCTGCAATCCATGGTTCAGCTGTCTTTGGTTATGAGGGCTGG
GTGGCATATTATGATATGAGGCTTGATGATTGCCTAAAAGCCAAATTAAATAAAAATGATGCATTGGTAAACAACAGAAA
AAGAAATTTTTATTTTTTCTATTATAGCAATGATGGGACAGAATTTGGAGGATCAATTTATCAGAAAGTATGTGAAGATC
TTGACACTTCAGTAAACCTTGCTTGGACATCAGGAACCAACTGCACTCGCTTTGGCATTGCAGCTAAATATCAGTTGGAT
CCCACTGCTTCCATTTCTGCAAAAGTCAACAACTCTAGTTTAATTGGAGTGGGCTACACTCAGACCCTGAGGCCTGGTGT
GAAGCTGACACTGTCTGCTCTGGTAGATGGGAAGAGCATTAATGCTGGAGGCCACAAACTTGGGCTTGCCCTGGAGTTGG
AGGCTTAA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP014902_placenta | 101 .01 RPM |
| SRP014902_testis | 60 .54 RPM |
| SRP018856_adipose | 115 .61 RPM |
| SRP018288_kidney | 173 .86 RPM |
| SRP018288_lung | 88 .28 RPM |
| SRP018288_liver | 66 .36 RPM |
| SRP018288_heart | 296 .96 RPM |
| SRP035408_liver | 53 .99 RPM |
| SRP035408_brain | 77 .75 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Rattus norvegicus | ENSRNOG00000013505 | possible_ortholog | 1 retrogene | |
| Sus scrofa | ENSSSCG00000014296 | within_species_paralog | 2 retrogenes | |
| Tupaia belangeri | ENSTBEG00000001946 | possible_ortholog | 4 retrogenes | |
| Vicugna pacos | ENSVPAG00000008068 | possible_ortholog | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_sscr_681 | 68.21 | 65.76 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_sscr_791 | 75.09 | 94.24 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSSSCG00000010320 retrocopies