Parental gene: | ENSSSCG00000010685 |
| Aliases: | None |
| Description: | None |
| Organism: | Pig (Sus scrofa) |
| Coordinates: | 14:140969134..140991840(-) |
>ENSSSCG00000010685
ATGATGGAAGACGACGGGCAGCCCCGGACTCTATACGTAGGTAACCTCTCCAGAGATGTAACAGAAGTTCTTATTCTTCA
GTTATTCAGTCAGATTGGACCCTGTAAAAGCTGTAAAATGATAACAGAGCAACCCGATAGCAGAAGGGTCAACTCTTCTG
TTGGATTTTCTGTTTTGCAGCATACAAGCAATGACCCATATTGCTTTGTGGAATTTTATGAACACAGAGATGCAGCTGCT
GCATTAGCTGCTATGAATGGGAGAAAAATTTTGGGAAAGGAGGTCAAAGTAAACTGGGCAACAACACCAAGTAGCCAGAA
AAAAGATACTTCCAATCATTTCCACGTGTTTGTTGGGGATTTGAGTCCAGAAATTACAACAGAAGATATCAAATCAGCAT
TTGCCCCCTTTGGTAAAATATCGGATGCCCGAGTAGTTAAAGATATGGCAACTGGAAAATCTAAAGGCTATGGCTTTGTA
TCTTTTTATAACAAACTGGATGCAGAAAATGCAATTGTGCATATGGGAGGTCAGTGGTTGGGTGGTCGTCAAATCAGAAC
CAATTGGGCCACACGTAAACCACCTGCACCTAAAAGTACACAAGAAAATAACACTAAGCAGTTGAGATTTGAAGATGTAG
TAAACCAGTCAAGTCCAAAAAATTGTACTGTGTACTGTGGAGGAATTGCTTCTGGGTTAACAGATCAGCTTATGAGACAG
ACATTCTCACCATTTGGGCAAATTATGGAAATCAGAGTTTTTCCGGAGAAGGGCTATTCATTTGTCAGATTTTCCACCCA
CGAAAGTGCAGCCCATGCCATTGTCTCAGTGAATGGTACTACGATCGAAGGACATGTTGTTAAATGCTATTGGGGTAAAG
AATCTCCTGATATGACTAAAAACTTCCAACAGGTCGACTATAGTCAGTGGGGCCAGTGGAGCCAAGTTTATGGAAATCCA
CAACAGTATGGACAGTATATGGCAAATGGGTGGCAAGTACCACCTTACGGAGTATACGGGCAGCCATGGAATCAACAAGG
ATTTGGAGTAGATCAATCACCTTCAGCTGCTTGGATGGGTGGATTTGGTGCTCAGCCTCCCCAAGGACAAGCCCCTCCCC
CTGTAATACCTCCTCCCAACCAGGCTGGATATGGCATGGCCAGTTACCAAACACAGTGA
ATGATGGAAGACGACGGGCAGCCCCGGACTCTATACGTAGGTAACCTCTCCAGAGATGTAACAGAAGTTCTTATTCTTCA
GTTATTCAGTCAGATTGGACCCTGTAAAAGCTGTAAAATGATAACAGAGCAACCCGATAGCAGAAGGGTCAACTCTTCTG
TTGGATTTTCTGTTTTGCAGCATACAAGCAATGACCCATATTGCTTTGTGGAATTTTATGAACACAGAGATGCAGCTGCT
GCATTAGCTGCTATGAATGGGAGAAAAATTTTGGGAAAGGAGGTCAAAGTAAACTGGGCAACAACACCAAGTAGCCAGAA
AAAAGATACTTCCAATCATTTCCACGTGTTTGTTGGGGATTTGAGTCCAGAAATTACAACAGAAGATATCAAATCAGCAT
TTGCCCCCTTTGGTAAAATATCGGATGCCCGAGTAGTTAAAGATATGGCAACTGGAAAATCTAAAGGCTATGGCTTTGTA
TCTTTTTATAACAAACTGGATGCAGAAAATGCAATTGTGCATATGGGAGGTCAGTGGTTGGGTGGTCGTCAAATCAGAAC
CAATTGGGCCACACGTAAACCACCTGCACCTAAAAGTACACAAGAAAATAACACTAAGCAGTTGAGATTTGAAGATGTAG
TAAACCAGTCAAGTCCAAAAAATTGTACTGTGTACTGTGGAGGAATTGCTTCTGGGTTAACAGATCAGCTTATGAGACAG
ACATTCTCACCATTTGGGCAAATTATGGAAATCAGAGTTTTTCCGGAGAAGGGCTATTCATTTGTCAGATTTTCCACCCA
CGAAAGTGCAGCCCATGCCATTGTCTCAGTGAATGGTACTACGATCGAAGGACATGTTGTTAAATGCTATTGGGGTAAAG
AATCTCCTGATATGACTAAAAACTTCCAACAGGTCGACTATAGTCAGTGGGGCCAGTGGAGCCAAGTTTATGGAAATCCA
CAACAGTATGGACAGTATATGGCAAATGGGTGGCAAGTACCACCTTACGGAGTATACGGGCAGCCATGGAATCAACAAGG
ATTTGGAGTAGATCAATCACCTTCAGCTGCTTGGATGGGTGGATTTGGTGCTCAGCCTCCCCAAGGACAAGCCCCTCCCC
CTGTAATACCTCCTCCCAACCAGGCTGGATATGGCATGGCCAGTTACCAAACACAGTGA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP014902_placenta | 37 .43 RPM |
| SRP014902_testis | 66 .06 RPM |
| SRP018856_adipose | 76 .77 RPM |
| SRP018288_kidney | 61 .57 RPM |
| SRP018288_lung | 63 .84 RPM |
| SRP018288_liver | 55 .65 RPM |
| SRP018288_heart | 62 .29 RPM |
| SRP035408_liver | 57 .45 RPM |
| SRP035408_brain | 32 .52 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Choloepus hoffmanni | ENSCHOG00000009888 | ortholog_one2many | 2 retrogenes | |
| Oryctolagus cuniculus | ENSOCUG00000003783 | ortholog_one2many | 1 retrogene | |
| Rattus norvegicus | ENSRNOG00000020271 | ortholog_one2many | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_sscr_11 | 85.83 | 64.03 | Please wait, loading  | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSSSCG00000010685 retrocopies